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We simulate an individual-based model that represents both the phenotype and genome of digital organisms with predator-prey interactions. We show how open-ended growth of complexity arises from the invariance of genetic evolution operators…

Populations and Evolution · Quantitative Biology 2009-11-13 Nicholas Guttenberg , Nigel Goldenfeld

We develop a model of social learning from overabundant information: Short-lived agents sequentially choose from a large set of (flexibly correlated) information sources for prediction of an unknown state. Signal realizations are public. We…

Computer Science and Game Theory · Computer Science 2018-06-20 Annie Liang , Xiaosheng Mu

Real-world attacks can be interpreted as the result of competitive interactions between networks, ranging from predator-prey networks to networks of countries under economic sanctions. Although the purpose of an attack is to damage a target…

Social and Information Networks · Computer Science 2015-10-22 Boris Podobnik , Davor Horvatic , Tomislav Lipic , Matjaz Perc , Javier M. Buldu , H. Eugene Stanley

The paradigm of layered networks is used to describe many real-world systems -- from biological networks, to social organizations and transportation systems. Recently there has been much progress in understanding the general properties of…

Physics and Society · Physics 2016-10-05 Márton Pósfai , Jianxi Gao , Sean P. Cornelius , Albert-László Barabási , Raissa M. D'Souza

Given an unknown dynamical system, what is the minimum number of samples needed for effective learning of its governing laws and accurate prediction of its future evolution behavior, and how to select these critical samples? In this work,…

Machine Learning · Computer Science 2024-01-15 Ce Zhang , Kailiang Wu , Zhihai He

Although species longevity is subject to a diverse range of selective forces, the mortality curves of a wide variety of organisms are rather similar. We argue that aging and its universal characteristics may have evolved by means of a…

Populations and Evolution · Quantitative Biology 2013-02-01 Dervis Can Vural , Greg Morrison , L. Mahadevan

A profound challenge for A-Life is to construct agents whose behavior is 'life-like' in a deep way. We propose an architecture and approach to constructing networks driving artificial agents, using processes analogous to the processes that…

Neural and Evolutionary Computing · Computer Science 2022-02-01 Addison Wood , Jory Schossau , Nick Sabaj , Richard Liu , Mark Reimers

There are diverse mechanisms driving the evolution of social networks. A key open question dealing with understanding their evolution is: How various preferential linking mechanisms produce networks with different features? In this paper we…

Physics and Society · Physics 2015-06-12 Haibo Hu , Jinli Guo , Xuan Liu

The dynamics of a prey-predator system with foraging facilitation among predators are investigated. The analysis involves the computation of many semi-algebraic systems of large degrees. We apply the pseudo-division reduction, real-root…

Dynamical Systems · Mathematics 2020-02-26 Yong Yao

Biological neural networks operate in the presence of task disruptions as they guide organisms toward goals. A familiar stream of stimulus-response causations can be disrupted by subtask streams imposed by the environment. For example,…

Machine Learning · Computer Science 2022-07-15 Thomas E. Portegys

The networks of predator-prey interactions in ecological systems are remarkably complex, but nevertheless surprisingly stable in terms of long term persistence of the system as a whole. In order to understand the mechanism driving the…

Populations and Evolution · Quantitative Biology 2015-06-05 Korinna T. Allhoff , Daniel Ritterskamp , Björn C. Rall , Barbara Drossel , Christian Guill

Designing systems for autonomous transport of groups of living agents has received a lot of attention in recent years due to a wealth of important potential applications. Biomimetic approaches are often sought, and a range of herding…

Other Quantitative Biology · Quantitative Biology 2026-02-20 Daniel Strömbom , Julianna Hoitt , Cameron Cloud

Mathematical modelling and numerical simulations of interaction populations are crucial topics in systems biology. The interactions of ecological models may occur among individuals of the same species or individuals of different species.…

Quantitative Methods · Quantitative Biology 2017-09-04 Sarbaz H. A. Khoshnaw

Competitive interactions represent one of the driving forces behind evolution and natural selection in biological and sociological systems. For example, animals in an ecosystem may vie for food or mates; in a market economy, firms may…

Physics and Society · Physics 2013-07-03 Jacobo Aguirre , David Papo , Javier M. Buldú

From social networks to P2P systems, network sampling arises in many settings. We present a detailed study on the nature of biases in network sampling strategies to shed light on how best to sample from networks. We investigate connections…

Social and Information Networks · Computer Science 2011-09-20 Arun S. Maiya , Tanya Y. Berger-Wolf

Latent space models are frequently used for modeling single-layer networks and include many popular special cases, such as the stochastic block model and the random dot product graph. However, they are not well-developed for more complex…

Methodology · Statistics 2021-07-09 Peter W. MacDonald , Elizaveta Levina , Ji Zhu

If one isolated species is supposed to evolve following the logistic mapping, then we are tempted to think that the dynamics of two species can be expressed by a coupled system of two discrete logistic equations. As three basic…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 R. Lopez-Ruiz , D. Fournier-Prunaret

Ecologists increasingly rely on Bayesian methods to fit capture-recapture models. Capture-recapture models are used to estimate abundance while accounting for imperfect detectability in individual-level data. A variety of implementations…

Methodology · Statistics 2023-02-01 Mevin B Hooten , Michael R Schwob , Devin S Johnson , Jacob S. Ivan

Many machine learning algorithms are based on the assumption that training examples are drawn independently. However, this assumption does not hold anymore when learning from a networked sample because two or more training examples may…

Artificial Intelligence · Computer Science 2017-06-06 Yuyi Wang , Jan Ramon , Zheng-Chu Guo

Designing optimal structure favorable to diffusion and effectively controlling the trapping process are crucial in the study of trapping problem---random walks with a single trap. In this paper, we study the trapping problem occurring on…

Statistical Mechanics · Physics 2015-08-12 Yihang Yang , Zhongzhi Zhang