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High-throughput experiments are shedding light on the topology of large regulatory networks and at the same time their functional states, namely the states of activation of the nodes (for example transcript or protein levels) in different…

Molecular Networks · Quantitative Biology 2009-02-13 M. Cosentino Lagomarsino , B. Bassetti , G. Castellani , D. Remondini

We review the recent fast progress in statistical physics of evolving networks. Interest has focused mainly on the structural properties of random complex networks in communications, biology, social sciences and economics. A number of giant…

Statistical Mechanics · Physics 2015-06-24 S. N. Dorogovtsev , J. F. F. Mendes

Recurrent Neural Networks (RNNs) are very successful at solving challenging problems with sequential data. However, this observed efficiency is not yet entirely explained by theory. It is known that a certain class of multiplicative RNNs…

Machine Learning · Computer Science 2019-01-31 Valentin Khrulkov , Oleksii Hrinchuk , Ivan Oseledets

Recently, community has paid increasing attention on model scaling and contributed to developing a model family with a wide spectrum of scales. Current methods either simply resort to a one-shot NAS manner to construct a non-structural and…

Computer Vision and Pattern Recognition · Computer Science 2022-07-18 Jiyang Xie , Xiu Su , Shan You , Zhanyu Ma , Fei Wang , Chen Qian

Deep generative models provide powerful tools for distributions over complicated manifolds, such as those of natural images. But many of these methods, including generative adversarial networks (GANs), can be difficult to train, in part…

Machine Learning · Statistics 2017-11-08 Akash Srivastava , Lazar Valkov , Chris Russell , Michael U. Gutmann , Charles Sutton

In standard generative deep learning models, such as autoencoders or GANs, the size of the parameter set is proportional to the complexity of the generated data distribution. A significant challenge is to deploy resource-hungry deep…

Machine Learning · Computer Science 2021-10-29 Shreshth Tuli , Shikhar Tuli , Giuliano Casale , Nicholas R. Jennings

We advocate the use of qualitative models in the analysis of large biological systems. We show how qualitative models are linked to theoretical differential models and practical graphical models of biological networks. A new technique for…

Molecular Networks · Quantitative Biology 2007-05-23 Philippe Veber , Michel Le_Borgne , Anne Siegel , Sandrine Lagarrigue , Ovidiu Radulescu

While network science has become an indispensable tool for studying complex systems, the conventional use of pairwise links often shows limitations in describing high-order interactions properly. Hypergraphs, where each edge can connect…

Physics and Society · Physics 2024-12-20 Zhao Li , Jing Zhang , Jiqiang Zhang , Guozhong Zheng , Weiran Cai , Li Chen

LHC physics crucially relies on our ability to simulate events efficiently from first principles. Modern machine learning, specifically generative networks, will help us tackle simulation challenges for the coming LHC runs. Such networks…

High Energy Physics - Phenomenology · Physics 2020-08-20 Anja Butter , Tilman Plehn

Generative models for network time series (also known as dynamic graphs) have tremendous potential in fields such as epidemiology, biology and economics, where complex graph-based dynamics are core objects of study. Designing flexible and…

Machine Learning · Statistics 2023-11-01 Jase Clarkson , Mihai Cucuringu , Andrew Elliott , Gesine Reinert

Given a connected network, it can be augmented by applying a growing strategy (e.g. random or scale-free rules) over the previously existing structure. Another approach for augmentation, recently introduced, involves incorporating a direct…

Statistical Mechanics · Physics 2007-05-23 Luciano da Fontoura Costa

One significant challenge of exploiting Graph neural networks (GNNs) in real-life scenarios is that they are always treated as black boxes, therefore leading to the requirement of interpretability. To address this, model-level…

Machine Learning · Computer Science 2025-09-22 Xiao Yue , Guangzhi Qu , Lige Gan

Data-driven generative modeling has made remarkable progress by leveraging the power of deep neural networks. A reoccurring challenge is how to enable a model to generate a rich variety of samples from the entire target distribution, rather…

Graphics · Computer Science 2019-09-04 Nadav Schor , Oren Katzir , Hao Zhang , Daniel Cohen-Or

The field of image generation through generative modelling is abundantly discussed nowadays. It can be used for various applications, such as up-scaling existing images, creating non-existing objects, such as interior design scenes,…

Computer Vision and Pattern Recognition · Computer Science 2023-03-16 Giorgia Adorni , Felix Boelter , Stefano Carlo Lambertenghi

In recent years, several models have improved the capacity to generate synthetic tabular datasets. However, such models focus on synthesizing simple columnar tables and are not useable on real-life data with complex structures. This paper…

Machine Learning · Computer Science 2022-02-07 Luca Canale , Nicolas Grislain , Grégoire Lothe , Johan Leduc

Generating new molecules with specified chemical and biological properties via generative models has emerged as a promising direction for drug discovery. However, existing methods require extensive training/fine-tuning with a large dataset,…

Quantitative Methods · Quantitative Biology 2023-04-25 Zichao Wang , Weili Nie , Zhuoran Qiao , Chaowei Xiao , Richard Baraniuk , Anima Anandkumar

Network datasets appear across a wide range of scientific fields, including biology, physics, and the social sciences. To enable data-driven discoveries from these networks, statistical inference techniques like estimation and hypothesis…

Methodology · Statistics 2026-02-19 Arpan Kumar , Minh Tang , Srijan Sengupta

While generative adversarial networks (GAN) have been widely adopted in various topics, in this paper we generalize the standard GAN to a new perspective by treating realness as a random variable that can be estimated from multiple angles.…

Machine Learning · Computer Science 2020-02-14 Yuanbo Xiangli , Yubin Deng , Bo Dai , Chen Change Loy , Dahua Lin

We construct a generative network for Monte-Carlo sampling in lattice field theories and beyond, for which the learning of layerwise propagation is done and optimised independently on each layer. The architecture uses physics-informed…

High Energy Physics - Lattice · Physics 2025-10-31 Friederike Ihssen , Renzo Kapust , Jan M. Pawlowski

A network is a typical expressive form of representing complex systems in terms of vertices and links, in which the pattern of interactions amongst components of the network is intricate. The network can be static that does not change over…

Social and Information Networks · Computer Science 2020-08-11 Hayat Dino Bedru , Shuo Yu , Xinru Xiao , Da Zhang , Liangtian Wan , He Guo , Feng Xia
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