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The locating chromatic number of a graph is the smallest integer $n$ such that there is a proper $n$-coloring $c$ and every vertex has a unique vector of distances to colors in $c$. We explore the necessary conditions and provide sufficient…

Combinatorics · Mathematics 2023-08-02 Yusuf Hafidh , Devi Imulia Dian Primaskun , Edy Tri Baskoro

We consider the well-studied partial sums problem in succint space where one is to maintain an array of n k-bit integers subject to updates such that partial sums queries can be efficiently answered. We present two succint versions of the…

Data Structures and Algorithms · Computer Science 2017-06-01 Philip Bille , Anders Roy Christiansen , Nicola Prezza , Frederik Rye Skjoldjensen

This work presents a discovery to advance the wisdom in a particular Succinct Data Structure: Wavelet Tree (Grossi, Gupta, and Vitter 2003). The discovery is first made by showing the feasibility of Reversed Indexes = Values: for integers…

Information Theory · Computer Science 2024-02-27 Xiangjun Peng

We study the structure of trees minimizing their number of stable sets for given order $n$ and stability number $\alpha$. Our main result is that the edges of a non-trivial extremal tree can be partitioned into $n-\alpha$ stars, each of…

Combinatorics · Mathematics 2024-03-11 Véronique Bruyère , Gwenaël Joret , Hadrien Mélot

We propose to design data structures called succinct geometric indexes of negligible space (more precisely, o(n) bits) that, by taking advantage of the n points in the data set permuted and stored elsewhere as a sequence, to support…

Computational Geometry · Computer Science 2008-05-28 Prosenjit Bose , Eric Y. Chen , Meng He , Anil Maheshwari , Pat Morin

Given a partition of an n element set into equivalence classes, we consider time-space tradeoffs for representing it to support the query that asks whether two given elements are in the same equivalence class. This has various applications…

Data Structures and Algorithms · Computer Science 2013-06-19 Moshe Lewenstein , J. Ian Munro , Venkatesh Raman

We describe a data structure that supports access, rank and select queries, as well as symbol insertions and deletions, on a string $S[1,n]$ over alphabet $[1..\sigma]$ in time $O(\lg n/\lg\lg n)$, which is optimal even on binary sequences…

Data Structures and Algorithms · Computer Science 2013-02-04 Gonzalo Navarro , Yakov Nekrich

For the first time we provide a succinct pattern matching index for arbitrary graphs that can be built in polynomial time, which requires less space and answers queries more efficiently than the one in [SODA 2021]. We show that, given an…

Data Structures and Algorithms · Computer Science 2021-11-09 Nicola Cotumaccio

With the recent popularity of graphical clustering methods, there has been an increased focus on the information between samples. We show how learning cluster structure using edge features naturally and simultaneously determines the most…

Machine Learning · Statistics 2016-05-09 Matt Barnes , Artur Dubrawski

We define simple variants of zip trees, called zip-zip trees, which provide several advantages over zip trees, including overcoming a bias that favors smaller keys over larger ones. We analyze zip-zip trees theoretically and empirically,…

Data Structures and Algorithms · Computer Science 2025-02-11 Ofek Gila , Michael T. Goodrich , Robert E. Tarjan

Graph coloring is one of the central problems in distributed graph algorithms. Much of the research on this topic has focused on coloring with $\Delta+1$ colors, where $\Delta$ denotes the maximum degree. Using $\Delta+1$ colors may be…

Data Structures and Algorithms · Computer Science 2017-08-24 Mohsen Ghaffari , Christiana Lymouri

We propose a flexible and multi-scale method for organizing, visualizing, and understanding datasets sampled from or near stratified spaces. The first part of the algorithm produces a cover tree using adaptive thresholds based on a…

Computational Geometry · Computer Science 2016-03-01 Paul Bendich , Ellen Gasparovic , Christopher J. Tralie , John Harer

Color-constrained subgraph problems are those where we are given an edge-colored (directed or undirected) graph and the task is to find a specific type of subgraph, like a spanning tree, an arborescence, a single-source shortest path tree,…

Data Structures and Algorithms · Computer Science 2024-07-24 P. S. Ardra , Jasine Babu , Kritika Kashyap , R. Krithika , Sreejith K. Pallathumadam , Deepak Rajendraprasad

Motivation: Second generation sequencing technology makes it feasible for many researches to obtain enough sequence reads to attempt the de novo assembly of higher eukaryotes (including mammals). De novo assembly not only provides a tool…

Genomics · Quantitative Biology 2010-08-17 Thomas C Conway , Andrew J Bromage

We show that any embedding of a planar graph can be encoded succinctly while efficiently answering a number of topological queries near-optimally. More precisely, we build on a succinct representation that encodes an embedding of $m$ edges…

Data Structures and Algorithms · Computer Science 2021-12-14 José Fuentes-Sepúlveda , Gonzalo Navarro , Diego Seco

Some coloring algorithms gives an upper bound for the locating chromatic number of trees with all the vertices not in an end-path colored by only two colors. That means, a better coloring algorithm could be achieved by optimizing the number…

Combinatorics · Mathematics 2020-11-18 Yusuf Hafidh , Edy Tri Baskoro

Suffix trees are one of the most versatile data structures in stringology, with many applications in bioinformatics. Their main drawback is their size, which can be tens of times larger than the input sequence. Much effort has been put into…

Data Structures and Algorithms · Computer Science 2017-12-18 Andrea Farruggia , Travis Gagie , Gonzalo Navarro , Simon J. Puglisi , Jouni Sirén

When considering the number of subtrees of trees, the extremal structures which maximize this number among binary trees and trees with a given maximum degree lead to some interesting facts that correlate to other graphical indices in…

Combinatorics · Mathematics 2012-10-11 Xiu-Mei Zhang , Xiao-Dong Zhang , Daniel Gray , Hua Wang

We study complex networks in which the nodes of the network are tagged with different colors depending on the functionality of the nodes (colored graphs), using information theory applied to the distribution of motifs in such networks. We…

Quantitative Methods · Quantitative Biology 2011-11-08 Christoph Adami , Jifeng Qian , Matthew Rupp , Arend Hintze

This paper explores the notion of approximate data structures, which return approximately correct answers to queries, but run faster than their exact counterparts. The paper describes approximate variants of the van Emde Boas data…

Data Structures and Algorithms · Computer Science 2015-06-02 Yossi Matias , Jeff Vitter , Neal Young