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We introduce Repro, an open-source library which aims at improving the reproducibility and usability of research code. The library provides a lightweight Python API for running software released by researchers within Docker containers which…

Computation and Language · Computer Science 2022-05-02 Daniel Deutsch , Dan Roth

With the goal of uncovering the challenges faced by European AI students during their research endeavors, we surveyed 28 AI doctoral candidates from 13 European countries. The outcomes underscore challenges in three key areas: (1) the…

Computers and Society · Computer Science 2024-08-14 Andrea Hrckova , Jennifer Renoux , Rafael Tolosana Calasanz , Daniela Chuda , Martin Tamajka , Jakub Simko

The vast majority of scientific contributions in the field of computational systems biology are based on mathematical models. These models can be broadly classified as either dynamic (kinetic) models or steady-state (constraint-based)…

Other Quantitative Biology · Quantitative Biology 2025-04-17 Moritz E. Beber

Scientific research frequently involves the use of computational tools and methods. Providing thorough documentation, open-source code, and data -- the creation of reproducible computational research -- helps others understand a…

Digital Libraries · Computer Science 2022-09-14 Tim von Hahn , Chris K. Mechefske

Can humans impute missing data with similar proficiency as machines? This is the question we aim to answer in this paper. We present a novel idea of converting observations with missing data in to a survey questionnaire, which is presented…

Machine Learning · Computer Science 2018-02-26 Lovedeep Gondara

Research data are often released upon journal publication to enable result verification and reproducibility. For that reason, research dissemination infrastructures typically support diverse datasets coming from numerous disciplines, from…

Digital Libraries · Computer Science 2023-05-29 Ana Trisovic

Computational reproducibility, the possibility for independent researchers to exactly reproduce published empirical results, is fundamental to science. Despite its importance, the proportion of research articles aiming for reproducibility…

Pilot studies are an essential cornerstone of the design of crowdsourcing campaigns, yet they are often only mentioned in passing in the scholarly literature. A lack of details surrounding pilot studies in crowdsourcing research hinders the…

Human-Computer Interaction · Computer Science 2023-12-14 Jonas Oppenlaender , Tahir Abbas , Ujwal Gadiraju

The high incidence of irreproducible research has led to urgent appeals for transparency and equitable practices in open science. For the scientific disciplines that rely on computationally intensive analyses of large data sets, a granular…

Considerable scientific work involves locating, analyzing, systematizing, and synthesizing other publications. Its results end up in a paper's "background" section or in standalone articles, which include meta-analyses and systematic…

Digital Libraries · Computer Science 2023-12-05 Diomidis Spinellis

In recent years there has been widespread concern in the scientific community over a reproducibility crisis. Among the major causes that have been identified is statistical: In many scientific research the statistical analysis (including…

Applications · Statistics 2017-08-17 Norman Matloff , Reed Davis , Laurel Beckett , Paul Thompson

We consider unsupervised crowdsourcing performance based on the model wherein the responses of end-users are essentially rated according to how their responses correlate with the majority of other responses to the same subtasks/questions.…

Machine Learning · Computer Science 2011-10-11 G. Kesidis , A. Kurve

Scientific data governance should prioritize maximizing the utility of data throughout the research lifecycle. Research software systems that enable analysis reproducibility inform data governance policies and assist administrators in…

One of the foundations of science is that researchers must publish the methodology used to achieve their results so that others can attempt to reproduce them. This has the added benefit of allowing methods to be adopted and adapted for…

Databases · Computer Science 2014-06-05 Paolo Missier , Simon Woodman , Hugo Hiden , Paul Watson

Cognitive computing systems require human labeled data for evaluation, and often for training. The standard practice used in gathering this data minimizes disagreement between annotators, and we have found this results in data that fails to…

Computation and Language · Computer Science 2018-09-27 Anca Dumitrache , Lora Aroyo , Chris Welty

Although reproducibility is a core tenet of the scientific method, it remains challenging to reproduce many results. Surprisingly, this also holds true for computational results in domains such as systems biology where there have been…

Quantitative Methods · Quantitative Biology 2021-04-13 Michael L. Blinov , John H. Gennari , Jonathan R. Karr , Ion I. Moraru , David P. Nickerson , Herbert M. Sauro

Distant supervision is a popular method for performing relation extraction from text that is known to produce noisy labels. Most progress in relation extraction and classification has been made with crowdsourced corrections to…

Computation and Language · Computer Science 2022-09-21 Anca Dumitrache , Lora Aroyo , Chris Welty

Crowd-sourcing has become a popular means of acquiring labeled data for a wide variety of tasks where humans are more accurate than computers, e.g., labeling images, matching objects, or analyzing sentiment. However, relying solely on the…

Machine Learning · Computer Science 2014-12-23 Barzan Mozafari , Purnamrita Sarkar , Michael J. Franklin , Michael I. Jordan , Samuel Madden

Autonomous Mobility-on-Demand (AMoD) systems, powered by advances in robotics, control, and Machine Learning (ML), offer a promising paradigm for future urban transportation. AMoD offers fast and personalized travel services by leveraging…

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