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Molecular conformation generation, a critical aspect of computational chemistry, involves producing the three-dimensional conformer geometry for a given molecule. Generating molecular conformation via diffusion requires learning to reverse…

Computational Physics · Physics 2023-10-10 Zihan Zhou , Ruiying Liu , Chaolong Ying , Ruimao Zhang , Tianshu Yu

This paper designs a molecule harvesting transmitter (TX) model, where the surface of a spherical TX is covered by heterogeneous receptors with different sizes and arbitrary locations. If molecules hit any receptor, they are absorbed by the…

Emerging Technologies · Computer Science 2024-10-28 Xinyu Huang , Yu Huang , Miaowen Wen , Nan Yang , Robert Schober

Statistical properties of environments experienced by biological signaling systems in the real world change, which necessitate adaptive responses to achieve high fidelity information transmission. One form of such adaptive response is gain…

Molecular Networks · Quantitative Biology 2012-05-01 Ilya Nemenman

The manner in which signals propagate through dense granular systems in both space and time is not well understood. In order to learn more about this process, we carry out discrete element simulations of the system response to excitations…

Soft Condensed Matter · Physics 2008-05-15 L. Kondic , O. M. Dybenko , R. P. Behringer

Inspired by biological communication systems, molecular communication has been proposed as a viable scheme to communicate between nano-sized devices separated by a very short distance. Here, molecules are released by the transmitter into…

Biological Physics · Physics 2016-11-15 Sachin Kadloor , Raviraj S. Adve , Andrew W. Eckford

Due to the limited capabilities of a single bio-nanomachine, complicated tasks can be performed only with the co-operation of multiple bio-nanomachines. In this work, we consider a diffusion-based molecular communication system with a…

Information Theory · Computer Science 2020-05-20 Nithin V. Sabu , Abhishek K. Gupta

Terahertz frequencies are an untapped resource for providing high-speed short-range communications. As a result, it is of interest to study the propagation characteristics of terahertz waves and to develop channel models. In previous work…

Signal Processing · Electrical Eng. & Systems 2022-10-17 Thanh Le , Ha Tran , Suresh Singh

One of the main challenges in diffusion-based molecular communication is dealing with the non-linearity of reaction-diffusion chemical equations. While numerical methods can be used to solve these equations, a change in the input signals or…

Information Theory · Computer Science 2021-06-04 Hamidreza Abin , Amin Gohari , Masoumeh Nasiri-Kenari

Chemical reactions are a prominent feature of molecular communication (MC) systems, with no direct parallels in wireless communications. While chemical reactions may be used inside the transmitter nodes, receiver nodes or the communication…

Information Theory · Computer Science 2018-04-25 Maryam Farahnak-Ghazani , Gholamali Aminian , Mahtab Mirmohseni , Amin Gohari , Masoumeh Nasiri-Kenari

In this paper, we consider a two-hop molecular communication network consisting of one nanotransmitter, one nanoreceiver, and one nanotransceiver acting as a relay. We consider two different schemes for relaying to improve the range of…

Information Theory · Computer Science 2016-11-17 Arman Ahmadzadeh , Adam Noel , Robert Schober

This paper presents a Markov-based system model for microfluidic molecular communication (MC) channels. By discretizing the advection-diffusion dynamics, the proposed model establishes a physically consistent state-space formulation. The…

Emerging Technologies · Computer Science 2025-11-11 Ruifeng Zheng , Pengjie Zhou , Pit Hofmann , Fatima Rani , Juan A. Cabrera , Frank H. P. Fitzek

Molecular Communication (MC) architectures suffer from molecular build-up in the channel if they do not have appropriate reuptake mechanisms. The molecular build-up either leads to intersymbol interference (ISI) or reduces the transmission…

Molecular Networks · Quantitative Biology 2024-02-27 Caglar Koca , Ozgur B. Akan

Propagating patterns are used to transfer and process information in chemical and physical prototypes of unconventional computing devices. Logical values are represented by fronts of traveling diffusive, trigger or phase waves. We apply…

This paper investigates the channel impulse response (CIR), i.e., the molecule hitting rate, of a molecular communication (MC) system employing an absorbing receiver (RX) covered by multiple non overlapping receptors. In this system,…

Emerging Technologies · Computer Science 2022-04-29 Xinyu Huang , Yuting Fang , Stuart T. Johnston , Mattew Faria , Nan Yang , Robert Schober

Molecular Communication (MC) channels are characterized by significant memory and nonlinear dynamics arising from diffusion and receptor kinetics. While often viewed as impairments to reliable data transmission, this work introduces a…

Emerging Technologies · Computer Science 2025-09-23 Mustafa Uzun , Kaan Burak Ikiz , Murat Kuscu

Living cells presumably employ optimized information transfer methods, enabling efficient communication even in noisy environments. As expected, the efficiency of chemical communications between cells depends on the properties of the…

The propagation of monochromatic light through a scattering medium produces speckle patterns in reflection and transmission, and the apparent randomness of these patterns prevents direct imaging through thick turbid media. Yet, since…

This survey paper focuses on the estimation schemes in molecular communication (MC) systems. The existing studies in estimation schemes can be divided into parameter estimation (e.g., distance, diffusion coefficient, and flow velocity) and…

Information Theory · Computer Science 2021-07-20 Xinyu Huang , Yuting Fang , Nan Yang

Molecular communication is a promising solution to enable intra-body communications among nanomachines. However, malicious and non-cooperative receivers can degrade the performance, compromising these systems' security. Analyzing the…

Information Theory · Computer Science 2022-05-25 Nithin V. Sabu , Abhishek K. Gupta , Neeraj Varshney , Anshuman Jindal

The formalism of the scattering matrix is applied to describe the transmission properties of multilayered structures with deep variations of the refractive index and arbitrary arrangements of the layers. We show that there is an exact…

Optics · Physics 2011-09-22 Victor Grigoriev , Fabio Biancalana