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The number of complete chloroplastic genomes increases day after day, making it possible to rethink plants phylogeny at the biomolecular era. Given a set of close plants sharing in the order of one hundred of core chloroplastic genes, this…

Populations and Evolution · Quantitative Biology 2017-06-28 Reem Alsrraj , Bassam AlKindy , Christophe Guyeux , Laurent Philippe , Jean-François Couchot

The amount of completely sequenced chloroplast genomes increases rapidly every day, leading to the possibility to build large scale phylogenetic trees of plant species. Considering a subset of close plant species defined according to their…

Artificial Intelligence · Computer Science 2015-04-21 Bassam AlKindy , Christophe Guyeux , Jean-François Couchot , Michel Salomon , Christian Parisod , Jacques M. Bahi

Feature selection is the process of identifying statistically most relevant features to improve the predictive capabilities of the classifiers. To find the best features subsets, the population based approaches like Particle Swarm…

Neural and Evolutionary Computing · Computer Science 2018-06-28 Naresh Mallenahalli , T. Hitendra Sarma

PSO is a widely recognized optimization algorithm inspired by social swarm. In this brief we present a heterogeneous strategy particle swarm optimization (HSPSO), in which a proportion of particles adopt a fully informed strategy to enhance…

Neural and Evolutionary Computing · Computer Science 2016-08-02 Wen-Bo Du , Wen Ying , Gang Yan , Yan-Bo Zhu , Xian-Bin Cao

This paper proposes a novel Extended Particle Swarm Optimization model (EPSO) that potentially enhances the search process of PSO for optimization problem. Evidently, gene expression profiles are significantly important measurement factor…

Neural and Evolutionary Computing · Computer Science 2020-08-11 Ali Hakem Alsaeedi , Adil L. Albukhnefis , Dhiah Al-Shammary , Muntasir Al-Asfoor

The particle swarm approach provides a low complexity solution to the optimization problem among various existing heuristic algorithms. Recent advances in the algorithm resulted in improved performance at the cost of increased computational…

Neural and Evolutionary Computing · Computer Science 2013-04-16 Muhammad Omer Bin Saeed , Muhammad Saqib Sohail , Syed Zeeshan Rizvi , Mobien Shoaib , Asrar Ul Haq Sheikh

In a distributed system, Task Assignment Problem (TAP) is a key factor for obtaining efficiency. TAP illustrates the appropriate allocation of tasks to the processor of each computer. In this problem, the proposed methods up to now try to…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-12-02 Mostafa Haghi Kashani

We apply two evolutionary search algorithms: Particle Swarm Optimization (PSO) and Genetic Algorithms (GAs) to the design of Cellular Automata (CA) that can perform computational tasks requiring global coordination. In particular, we…

Artificial Intelligence · Computer Science 2019-09-10 Anthony D. Rhodes

Particle Swarm Optimization (PSO) is a stochastic technique for solving the optimization problem. Attempts have been made to shorten the computation times of PSO based algorithms with massive threads on GPUs (graphic processing units),…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-12-05 Chuan-Chi Wang , Chun-Yen Ho , Chia-Heng Tu , Shih-Hao Hung

Swarm intelligence optimization algorithms can be adopted in swarm robotics for target searching tasks in a 2-D or 3-D space by treating the target signal strength as fitness values. Many current works in the literature have achieved good…

Neural and Evolutionary Computing · Computer Science 2021-05-28 Jian Yang , Yuhui Shi

Convolutional neural networks (CNNs) are one of the most effective deep learning methods to solve image classification problems, but the best architecture of a CNN to solve a specific problem can be extremely complicated and hard to design.…

Neural and Evolutionary Computing · Computer Science 2018-03-20 Bin Wang , Yanan Sun , Bing Xue , Mengjie Zhang

Compared to other techniques, particle swarm optimization is more frequently utilized because of its ease of use and low variability. However, it is complicated to find the best possible solution in the search space in large-scale…

Neural and Evolutionary Computing · Computer Science 2024-03-19 Hamed Zibaei , Mohammad Saadi Mesgari

The way to infer well-supported phylogenetic trees that precisely reflect the evolutionary process is a challenging task that completely depends on the way the related core genes have been found. In previous computational biology studies,…

Swarm optimization algorithms are widely used for feature selection before data mining and machine learning applications. The metaheuristic nature-inspired feature selection approaches are used for single-objective optimization tasks,…

Artificial Intelligence · Computer Science 2021-07-30 Hritam Basak , Mayukhmali Das , Susmita Modak

Multi-swarm particle optimisation algorithms are gaining popularity due to their ability to locate multiple optimum points concurrently. In this family of algorithms, clustering-based multi-swarm algorithms are among the most effective…

Neural and Evolutionary Computing · Computer Science 2025-11-25 Yves Matanga , Yanxia Sun , Zenghui Wang

Many real-world problems are dynamic optimization problems. In this case, the optima in the environment change dynamically. Therefore, traditional optimization algorithms disable to track and find optima. In this paper, a new multi-swarm…

Neural and Evolutionary Computing · Computer Science 2013-08-08 Somayeh Nabizadeh , Alireza Rezvanian , Mohammd Reza Meybodi

Evolutionary computation (EC) algorithms, such as discrete and multi-objective versions of particle swarm optimization (PSO), have been applied to solve the Feature selection (FS) problem, tackling the combinatorial explosion of search…

Neural and Evolutionary Computing · Computer Science 2019-01-28 Hassen Dhrif , Luis G. Sanchez Giraldo , Miroslav Kubat , Stefan Wuchty

Phylogenetic trees are leaf-labelled trees used to model the evolution of species. In practice it is not uncommon to obtain two topologically distinct trees for the same set of species, and this motivates the use of distance measures to…

Data Structures and Algorithms · Computer Science 2026-03-24 David Mestel , Steven Chaplick , Steven Kelk , Ruben Meuwese

Most of major algorithms for phylogenetic tree reconstruction assume that sequences in the analyzed set either do not have any offspring, or that parent sequences can maximally mutate into just two descendants. The graph resulting from such…

Populations and Evolution · Quantitative Biology 2013-10-09 Piotr Plonski , Jan P. Radomski

Swarm based optimization algorithms have demonstrated remarkable success in solving complex optimization problems. However, their widespread adoption remains sceptical due to limited transparency in how different algorithmic components…

Neural and Evolutionary Computing · Computer Science 2026-04-01 Nitin Gupta , Bapi Dutta , Anupam Yadav
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