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Ordinary differential equation models facilitate the understanding of cellular signal transduction and other biological processes. However, for large and comprehensive models, the computational cost of simulating or calibrating can be…

Quantitative Methods · Quantitative Biology 2023-11-29 Fabian Fröhlich , Daniel Weindl , Yannik Schälte , Dilan Pathirana , Łukasz Paszkowski , Glenn Terje Lines , Paul Stapor , Jan Hasenauer

Diff is a software program that detects differences between two data sets and is useful in natural language processing. This paper shows several examples of the application of diff. They include the detection of differences between two…

Computation and Language · Computer Science 2007-05-23 Masaki Murata , Hitoshi Isahara

Many interesting and useful symbolic computation algorithms manipulate mathematical expressions in mathematically meaningful ways. Although these algorithms are commonplace in computer algebra systems, they can be surprisingly difficult to…

Logic in Computer Science · Computer Science 2019-05-07 Jacques Carette , William M. Farmer

Building a general-purpose intelligent home-assistant agent skilled in diverse tasks by human commands is a long-term blueprint of embodied AI research, which poses requirements on task planning, environment modeling, and object…

Computer Vision and Pattern Recognition · Computer Science 2024-07-23 Xinyu Xu , Shengcheng Luo , Yanchao Yang , Yong-Lu Li , Cewu Lu

The FAdo system is a symbolic manipulator of formal languages objects, implemented in Python. In this work, we extend its capabilities by implementing methods to manipulate transducers and we go one level higher than existing formal…

Formal Languages and Automata Theory · Computer Science 2016-08-02 Stavros Konstantinidis , Casey Meijer , Nelma Moreira , Rogério Reis

The context of this work is the design of a software, called MEMSALab, dedicated to the automatic derivation of multiscale models of arrays of micro- and nanosystems. In this domain a model is a partial differential equation. Multiscale…

Symbolic Computation · Computer Science 2015-03-17 Walid Belkhir , Alain Giorgetti , Michel Lenczner

A critical step in topology optimization (TO) is finding sensitivities. Manual derivation and implementation of the sensitivities can be quite laborious and error-prone, especially for non-trivial objectives, constraints and material…

Mathematical Software · Computer Science 2022-01-31 Aaditya Chandrasekhar , Saketh Sridhara , Krishnan Suresh

Scientific computation is a discipline that combines numerical analysis, physical understanding, algorithm development, and structured programming. Several yottacycles per year on the world's largest computers are spent simulating problems…

Programming Languages · Computer Science 2018-01-10 Matthew G. Knepley

Designing a new domain specific language is as any other complex task sometimes error-prone and usually time consuming, especially if the language shall be of high-quality and comfortably usable. Existing tool support focuses on the…

Software Engineering · Computer Science 2014-09-09 Gabor Karsai , Holger Krahn , Claas Pinkernell , Bernhard Rumpe , Martin Schindler , Steven Völkel

Domain-specific languages (DSLs) for machine learning are revolutionizing the speed and efficiency of machine learning workloads as they enable users easy access to high-performance compiler optimizations and accelerators. However, to take…

Automatic differentiation (AD) is a technique for computing the derivative of a function represented by a program. This technique is considered as the de-facto standard for computing the differentiation in many machine learning and…

Programming Languages · Computer Science 2022-12-21 Amir Shaikhha , Mathieu Huot , Shabnam Ghasemirad , Andrew Fitzgibbon , Simon Peyton Jones , Dimitrios Vytiniotis

Current direct modeling systems limit users to low-level interactions with vertices, edges, and faces, forcing designers to manage detailed geometric elements rather than focusing on high-level design intent. This paper introduces semantic…

Human-Computer Interaction · Computer Science 2025-04-22 Qiang Zou , Shuo Liu

Analogous to regular string and tree languages, regular languages of directed acyclic graphs (DAGs) are defined in the literature. Although called regular, those DAG-languages are more powerful and, consequently, standard problems have a…

Formal Languages and Automata Theory · Computer Science 2024-09-12 Yvo Ad Meeres

Over the past decade, different domain-specific languages (DSLs) were proposed to formally specify requirements stated in legal contracts, mainly for analysis but also for code generation. Symboleo is a promising language in that area.…

Software Engineering · Computer Science 2024-11-26 Mounira Nihad Zitouni , Amal Ahmed Anda , Sahil Rajpal , Daniel Amyot , John Mylopoulos

Domain-specific languages (DSLs) play a crucial role in resolving internal dependencies across enterprises and boosts their upfront business management processes. Yet, a lot of development is needed to build modelling frameworks which…

Software Engineering · Computer Science 2025-09-09 Heerok Banerjee

The need to efficiently calculate first- and higher-order derivatives of increasingly complex models expressed in Python has stressed or exceeded the capabilities of available tools. In this work, we explore techniques from the field of…

Machine Learning · Computer Science 2018-09-27 Bart van Merriënboer , Dan Moldovan , Alexander B Wiltschko

As recent programming languages provide improved conciseness and flexibility of syntax, the development of embedded or internal Domain-Specific Languages has increased. The field of Modeling and Simulation has had a long history of…

Programming Languages · Computer Science 2011-12-09 Michael E. Cotterell , John A. Miller , Tom Horton

Numerical simulations can help solve complex problems. Most of these algorithms are massively parallel and thus good candidates for FPGA acceleration thanks to spatial parallelism. Modern FPGA devices can leverage high-bandwidth memory…

Hardware Architecture · Computer Science 2022-11-09 Stephanie Soldavini , Karl F. A. Friebel , Mattia Tibaldi , Gerald Hempel , Jeronimo Castrillon , Christian Pilato

An efficient and flexible engine for computing fixed points is critical for many practical applications. In this paper, we firstly present a goal-directed fixed point computation strategy in the logic programming paradigm. The strategy…

Programming Languages · Computer Science 2007-05-23 Hai-Feng Guo , Gopal Gupta

We present dPASP, a novel declarative probabilistic logic programming framework for differentiable neuro-symbolic reasoning. The framework allows for the specification of discrete probabilistic models with neural predicates, logic…

Artificial Intelligence · Computer Science 2023-08-08 Renato Lui Geh , Jonas Gonçalves , Igor Cataneo Silveira , Denis Deratani Mauá , Fabio Gagliardi Cozman