Related papers: On the geometry of regular icosahedral capsids con…
Recent high resolution structures for viral capsids with 12, 32 and 72 subunits ($T1$, $T3$ and $T7$ viruses) have confirmed theoretical predictions of an icosadeltahedral structure with 12 subunits having five nearest neighbors (pentamers)…
I discuss the symmetry of fullerenes, viruses and geodesic domes within a unified framework of icosadeltahedral representation of these objects. The icosadeltahedral symmetry is explained in details by examination of all of these…
Recent studies reveal that certain viruses package a portion of their genome in a manner that mirrors the icosahedral symmetry of the protein container, or capsid. Graph theoretical constraints forbid exact realization of icosahedral…
A formalism is developed which allows to determine the locations of all local symmetry axes of three-dimensional particles with overall icosahedral symmetry. It relies on the fact that the root system of the non-crystallographic Coxeter…
Viruses are biological nanosystems with a capsid of protein-made capsomer units that encloses and protects the genetic material responsible for their replication. Here we show how the geometrical constraints of the capsomer-capsomer…
The Caspar-Klug classification of viruses whose protein shell, called viral capsid, exhibits icosahedral symmetry, has recently been extended to incorporate viruses whose capsid proteins are exclusively organised in pentamers. The approach,…
Retaining the combinatorial Euclidean structure of a regular icosahedron, namely the 20 equiangular (planar) triangles, the 30 edges of length 1, and the 12 different vertices together with the incidence structure, we investigate variations…
We apply Landau theory of crystallization to explain and to classify the capsid structures of small viruses with spherical topology and icosahedral symmetry. We develop an explicit method which predicts the positions of centers of mass for…
The structural organisation of the viral genome within its protein container, called the viral capsid, is an important aspect of virus architecture. Many single-stranded (ss) RNA viruses organise a significant part of their genome in a…
The coincidence problem for three-dimensional discrete structures with icosahedral symmetry is reinvestigated. We present a parametric description of the coincidence rotations based on special quaternions, called icosian numbers. In…
3D-facets of the Delone cells representing the deep and shallow holes of the root lattice D6 which tile the six-dimensional Euclidean space in an alternating order are projected into three-dimensional space. They are classified into six…
The assembly and maturation of viruses with icosahedral capsids must be coordinated with icosahedral symmetry. The icosahedral symmetry imposes also the restrictions on the cooperative specific interactions between genomic RNA/DNA and coat…
Spherical viral shells with icosahedral symmetry have been considered as quasicrystalline tilings. Similarly to known Caspar-Klug quasi-equivalence theory, the presented approach also minimizes the number of conformations necessary for the…
The icosidodecahedron has 30 vertices, one at the center of each edge of a regular icosahedron -- or equivalently, one at the center of each edge of a regular dodecahedron. It is a beautiful, highly symmetrical shape. But it is just a…
We consider the incidence structure formed by the twelve pentagons given by the vertex neighborhoods of the icosahedron. Interpreting this structure purely in terms of coplanarity conditions, we show that -- up to projective equivalence --…
To advance Thomson problem we generalize physical principles suggested by Caspar and Klug (CK) to model icosahedral capsids. Proposed simplest distortions of the CK spherical arrangements yield new-type trial structures very close to the…
Icosahedron and dodecahedron can be dissected into tetrahedral tiles projected from 3D-facets of the Delone polytopes representing the deep and shallow holes of the root lattice D_6. The six fundamental tiles of tetrahedra of edge lengths 1…
We use computer simulations to study a model, first proposed by Wales [1], for the reversible and monodisperse self-assembly of simple icosahedral virus capsid structures. The success and efficiency of assembly as a function of…
It is well known that the point group of the root lattice D_6 admits the icosahedral group as a maximal subgroup. The generators of the icosahedral group H_3, its roots and weights are determined in terms of those of D_6. Platonic and…
We investigate the subgroup structure of the hyperoctahedral group in six dimensions. In particular, we study the subgroups isomorphic to the icosahedral group. We classify the orthogonal crystallographic representations of the icosahedral…