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Intra-tumour phenotypic heterogeneity limits accuracy of clinical diagnostics and hampers the efficiency of anti-cancer therapies. Dealing with this cellular heterogeneity requires adequate understanding of its sources, which is extremely…

The difficulty of detecting mitosis and its similarity to non-mitosis objects has remained a challenge in computational pathology. The lack of publicly available data has added more complexity. Deep learning algorithms have shown potentials…

Image and Video Processing · Electrical Eng. & Systems 2021-10-25 Seyed H. Mirjahanmardi , Samir Mitha , Salar Razavi , Susan Done , April Khademi

Cells achieve size homeostasis by regulating their division timing based on their size, added size, and cell cycle time. Previous research under steady-state conditions demonstrated the robustness of these mechanisms. However, their dynamic…

Quantitative Methods · Quantitative Biology 2025-12-01 Cesar Nieto , Sayeh Rezaee , Cesar Augusto Vargas-Garcia , Abhyudai Singh

Determining cell identities in imaging sequences is an important yet challenging task. The conventional method for cell identification is via cell tracking, which is complex and can be time-consuming. In this study, we propose an innovative…

Quantitative Methods · Quantitative Biology 2024-03-05 Baiyang Dai , Jiamin Yang , Hari Shroff , Patrick La Riviere

Detection of mitosis events plays an important role in biomedical research. Deep-learning-based mitosis detection methods have achieved outstanding performance with a certain amount of labeled data. However, these methods require…

Computer Vision and Pattern Recognition · Computer Science 2023-07-11 Kazuya Nishimura , Ami Katanaya , Shinichiro Chuma , Ryoma Bise

Reproduction and natural selection are the key elements of life. In order to reproduce, the genetic material must be doubled, separated and placed into two new daughter cells, each containing a complete set of chromosomes and organelles. In…

Subcellular Processes · Quantitative Biology 2016-11-16 Bashar Ibrahim

Chest radiographs are frequently used to verify the correct intubation of patients in the emergency room. Fast and accurate identification and localization of the endotracheal (ET) tube is critical for the patient. In this study we propose…

Image and Video Processing · Electrical Eng. & Systems 2019-08-21 Maayan Frid-Adar , Rula Amer , Hayit Greenspan

In the effort to aid cytologic diagnostics by establishing automatic single cell screening using high throughput digital holographic microscopy for clinical studies thousands of images and millions of cells are captured. The bottleneck lies…

Image and Video Processing · Electrical Eng. & Systems 2024-10-28 Julia Sistermanns , Ellen Emken , Gregor Weirich , Oliver Hayden , Wolfgang Utschick

To maintain renewing epithelial tissues in a healthy, homeostatic state, (stem) cell divisions and differentiation need to be tightly regulated. Mechanisms of homeostatic control often rely on crowding control: cells are able to sense the…

Tissues and Organs · Quantitative Biology 2023-01-16 Cristina Parigini , Philip Greulich

Understanding the rules underlying organismal development is a major unsolved problem in biology. Each cell in a developing organism responds to signals in its local environment by dividing, excreting, consuming, or reorganizing, yet how…

Cell Behavior · Quantitative Biology 2025-08-20 Ramya Deshpande , Francesco Mottes , Ariana-Dalia Vlad , Michael P. Brenner , Alma dal Co

Routine computed tomography (CT) scans often detect a wide range of renal cysts, some of which may be malignant. Early and precise localization of these cysts can significantly aid quantitative image analysis. Current segmentation methods,…

We present a novel method for identification of the boundary of embryonic cells (blastomeres) in Hoffman Modulation Contrast (HMC) microscopic images that are taken between day one to day three. Identification of boundaries of blastomeres…

Computer Vision and Pattern Recognition · Computer Science 2019-10-15 Shakiba Kheradmand , Parvaneh Saeedi , Jason Au , John Havelock

We investigate the use of self-tracking data and unsupervised mixed-membership models to phenotype endometriosis. Endometriosis is a systemic, chronic condition of women in reproductive age and, at the same time, a highly enigmatic…

Computers and Society · Computer Science 2018-11-09 Iñigo Urteaga , Mollie McKillop , Sharon Lipsky-Gorman , Noémie Elhadad

The manual outlining of hepatic metastasis in (US) ultrasound acquisitions from patients suffering from pancreatic cancer is common practice. However, such pure manual measurements are often very time consuming, and the results repeatedly…

Computer Vision and Pattern Recognition · Computer Science 2018-03-13 Jan Egger , Xiaojun Chen , Lucas Bettac , Mark Hänle , Tilmann Gräter , Wolfram Zoller , Dieter Schmalstieg , Alexander Hann

Accurate automatic organ segmentation is an important yet challenging problem for medical image analysis. The pancreas is an abdominal organ with very high anatomical variability. This inhibits traditional segmentation methods from…

Computer Vision and Pattern Recognition · Computer Science 2016-06-28 Holger R. Roth , Le Lu , Amal Farag , Andrew Sohn , Ronald M. Summers

Background: Colorectal cancer (CRC) remains a leading cause of cancer-related mortality worldwide. Accurate survival prediction is essential for treatment stratification, yet existing pathology foundation models often overlook…

Computer Vision and Pattern Recognition · Computer Science 2026-04-15 Hikmat Khan , Usama Sajjad , Metin N. Gurcan , Anil Parwani , Wendy L. Frankel , Wei Chen , Muhammad Khalid Khan Niazi

Cells, other than their biological properties, have different electric and physical properties. In an impedance cytometer, cells should pass one by one in the detection region where pairs of electrodes are located. When cells are located…

Signal Processing · Electrical Eng. & Systems 2022-03-09 Hassan Raji , Iraj Dehghan Hamani

Current gastric cancer (GCa) risk systems are prone to errors since they evaluate a visual estimation of intestinal metaplasia percentages in histopathology images of gastric mucosa to assign a risk. This study presents an automated method…

Abdominal computed tomography (CT) scans are frequently performed in clinical settings. Opportunistic CT involves repurposing routine CT images to extract diagnostic information and is an emerging tool for detecting underdiagnosed…

Computer Vision and Pattern Recognition · Computer Science 2025-10-14 Asad Aali , Andrew Johnston , Louis Blankemeier , Dave Van Veen , Laura T Derry , David Svec , Jason Hom , Robert D. Boutin , Akshay S. Chaudhari

Accurate assessment of stiffness distribution is essential due to the critical role of single cell mechanobiology in the regulation of many vital cellular processes such as proliferation, adhesion, migration, and motility. Cell stiffness is…