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Some genes can change their relative locations in a genome. Thus for different individuals of the same species, the orders of genes might be different. Such jumping genes are called transposons. A practical problem is to determine…

Genomics · Quantitative Biology 2022-09-02 Yue Wang

Reasoning on large-scale knowledge graphs has been long dominated by embedding methods. While path-based methods possess the inductive capacity that embeddings lack, their scalability is limited by the exponential number of paths. Here we…

Artificial Intelligence · Computer Science 2023-11-10 Zhaocheng Zhu , Xinyu Yuan , Mikhail Galkin , Sophie Xhonneux , Ming Zhang , Maxime Gazeau , Jian Tang

In this paper we examine a number of methods for probing and understanding the large-scale structure of networks that evolve over time. We focus in particular on citation networks, networks of references between documents such as papers,…

Physics and Society · Physics 2007-10-18 E. A. Leicht , Gavin Clarkson , Kerby Shedden , M. E. J. Newman

The emergence of new digital technologies has allowed the study of human behaviour at a scale and at level of granularity that were unthinkable just a decade ago. In particular, by analysing the digital traces left by people interacting in…

Computers and Society · Computer Science 2019-08-09 Mirco Musolesi

The objective of the knowledge base completion problem is to infer missing information from existing facts in a knowledge base. Prior work has demonstrated the effectiveness of path-ranking based methods, which solve the problem by…

Artificial Intelligence · Computer Science 2019-11-27 Weiyu Liu , Angel Daruna , Zsolt Kira , Sonia Chernova

Starting with a collection of traces generated by process executions, process discovery is the task of constructing a simple model that describes the process, where simplicity is often measured in terms of model size. The challenge of…

Artificial Intelligence · Computer Science 2024-04-17 Hanan Alkhammash , Artem Polyvyanyy , Alistair Moffat

The entity alignment of science and technology patents aims to link the equivalent entities in the knowledge graph of different science and technology patent data sources. Most entity alignment methods only use graph neural network to…

Computation and Language · Computer Science 2023-11-02 Runze Fang , Yawen Li , Yingxia Shao , Zeli Guan , Zhe Xue

Knowledge tracing---where a machine models the knowledge of a student as they interact with coursework---is a well established problem in computer supported education. Though effectively modeling student knowledge would have high…

Artificial Intelligence · Computer Science 2015-06-22 Chris Piech , Jonathan Spencer , Jonathan Huang , Surya Ganguli , Mehran Sahami , Leonidas Guibas , Jascha Sohl-Dickstein

We present a path-based design model and system for designing and creating visualisations. Our model represents a systematic approach to constructing visual representations of data or concepts following a predefined sequence of steps. The…

Human-Computer Interaction · Computer Science 2024-08-08 James Jackson , Panagiotis D. Ritsos , Peter W. S. Butcher , Jonathan C. Roberts

Motivation: Identifying the molecular pathways more prone to disruption during a pathological process is a key task in network medicine and, more in general, in systems biology. Results: In this work we propose a pipeline that couples a…

Traditional technology mapping suffers from systemic inaccuracies in delay estimation due to its reliance on abstract, technology-agnostic delay models that fail to capture the nuanced timing behavior behavior of real post-mapping circuits.…

Emerging Technologies · Computer Science 2026-01-22 Wentao Jiang , Jingxin Wang , Zhang Hu , Zhengyuan Shi , Chengyu Ma , Qiang Xu , Weikang Qian , Zhufei Chu

More than ever, technical inventions are the symbol of our society's advance. Patents guarantee their creators protection against infringement. For an invention being patentable, its novelty and inventiveness have to be assessed. Therefore,…

Information Retrieval · Computer Science 2019-03-06 Lea Helmers , Franziska Horn , Franziska Biegler , Tim Oppermann , Klaus-Robert Müller

Knowledge tracing is a method used in education to assess and track the acquisition of knowledge by individual learners. It involves using a variety of techniques, such as quizzes, tests, and other forms of assessment, to determine what a…

Computers and Society · Computer Science 2023-11-28 Yann Hicke

We introduce a new approach to solving path-finding problems under uncertainty by representing them as probabilistic models and applying domain-independent inference algorithms to the models. This approach separates problem representation…

Artificial Intelligence · Computer Science 2015-06-09 David Tolpin , Brooks Paige , Jan Willem van de Meent , Frank Wood

Technology is a complex system, with technologies relating to each other in a space that can be mapped as a network. The technology network's structure can reveal properties of technologies and of human behavior, if it can be mapped…

Physics and Society · Physics 2017-05-09 Jeff Alstott , Giorgio Triulzi , Bowen Yan , Jianxi Luo

Advanced persistent threats (APT) are stealthy cyber-attacks that are aimed at stealing valuable information from target organizations and tend to extend in time. Blocking all APTs is impossible, security experts caution, hence the…

Cryptography and Security · Computer Science 2021-05-24 Sidahmed Benabderrahmane , Ghita Berrada , James Cheney , Petko Valtchev

We provide an introduction to the topic of path signatures as means of feature extraction for machine learning from data streams. The article stresses the mathematical theory underlying the signature methodology, highlighting the conceptual…

Machine Learning · Computer Science 2025-06-03 Stephan Sturm

Drug repositioning-a promising strategy for discovering new therapeutic uses for existing drugs-has been increasingly explored in the computational science literature using biomedical databases. However, the technological potential of drug…

Artificial Intelligence · Computer Science 2024-07-25 Yongseung Jegal , Jaewoong Choi , Jiho Lee , Ki-Su Park , Seyoung Lee , Janghyeok Yoon

The Precision Medicine Initiative states that treatments for a patient should take into account not only the patient's disease, but his/her specific genetic variation as well. The vast biomedical literature holds the potential for…

Information Retrieval · Computer Science 2019-04-22 Jiaming Qu , Yue Wang

Given two rooted, labeled trees $P$ and $T$ the tree path subsequence problem is to determine which paths in $P$ are subsequences of which paths in $T$. Here a path begins at the root and ends at a leaf. In this paper we propose this…

Data Structures and Algorithms · Computer Science 2011-11-09 Philip Bille , Inge Li Goertz
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