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Active biological flow networks pervade nature and span a wide range of scales, from arterial blood vessels and bronchial mucus transport in humans to bacterial flow through porous media or plasmodial shuttle streaming in slime molds.…

Biological Physics · Physics 2016-07-28 Francis G. Woodhouse , Aden Forrow , Joanna B. Fawcett , Jörn Dunkel

Neural dynamics of energy-based models are governed by energy minimization and the patterns stored in the network are retrieved when the system reaches equilibrium. However, when the system is driven by time-varying external input, the…

Neurons and Cognition · Quantitative Biology 2020-12-25 Kevin S. Chen

Adaptive transport networks in biological and physical systems exhibit hierarchical organization, characteristic channel spacing, and robust scaling relations. Existing adaptive network models, formulated on a lattice, successfully…

Adaptation and Self-Organizing Systems · Physics 2026-05-18 Sidney Holden , Mia C. Morrell , Geoffrey Vasil , Eleni Katifori

Flow networks are essential for both living organisms and enginneered systems. These networks often present complex dynamics controlled, at least in part, by their topology. Previous works have shown that topologically complex networks…

Soft Condensed Matter · Physics 2020-03-24 Miguel Ruiz-Garcia , Eleni Katifori

A networked oscillator based analysis is performed for periodic bluff body flows to examine and control the transfer of kinetic energy. Spatial modes extracted from the flow field with corresponding amplitudes form a set of oscillators…

Fluid Dynamics · Physics 2018-06-27 Aditya G. Nair , Steven L. Brunton , Kunihiko Taira

Here we numerically study a model of excitable media, namely, a network with occasionally quiet nodes and connection weights that vary with activity on a short-time scale. Even in the absence of stimuli, this exhibits unstable dynamics,…

Disordered Systems and Neural Networks · Physics 2015-05-19 S. de Franciscis , J. J. Torres , J. Marro

Recent experiments show that both natural and artificial microswimmers in narrow channel-like geometries will self-organise to form steady, directed flows. This suggests that networks of flowing active matter could function as novel…

Biological Physics · Physics 2018-05-08 Francis G. Woodhouse , Joanna B. Fawcett , Jörn Dunkel

This work aims to propose and design a class of networks of coupled linear and nonlinear oscillators, in which short bursts of exogenous excitation result in sustained endogenous network activity that returns to a quiescent state only after…

Dynamical Systems · Mathematics 2023-09-07 Yu Mao , Harry Dankowicz

We analyze transport on a graph with multiple constraints and where the weight of the edges connecting the nodes is a dynamical variable. The network dynamics results from the interplay between a nonlinear function of the flow, dissipation,…

Statistical Mechanics · Physics 2023-11-28 Frederic Folz , Kurt Mehlhorn , Giovanna Morigi

Estimating the structure of physical flow networks such as power grids is critical to secure delivery of energy. This paper discusses statistical structure estimation in power grids in the "under-excited" regime, where a subset of internal…

Systems and Control · Electrical Eng. & Systems 2020-05-06 Deepjyoti Deka , Harish Doddi , Sidhant Misra , Murti Salapaka

In this paper, we study hydrogen-natural gas mixtures transported through pipeline networks. The flow is modeled by the isothermal Euler equations with a pressure law involving a non-constant, composition-dependent compressibility factor.…

Numerical Analysis · Mathematics 2026-02-10 Simone Göttlich , Michael Schuster , Alena Ulke

Transport networks are crucial to the functioning of natural and technological systems. Nature features transport networks that are adaptive over a vast range of parameters, thus providing an impressive level of robustness in supply.…

Adaptation and Self-Organizing Systems · Physics 2017-11-28 Erik Andreas Martens , Konstantin Klemm

A novel discrete model (D-model) is presented describing nonlinear wave interactions in systems with small and moderate nonlinearity under narrow frequency band excitation. It integrates in a single theoretical frame two mechanisms of…

Fluid Dynamics · Physics 2012-11-02 Elena Kartashova

This paper presents a unified framework for analyzing the input-output behavior of discrete time complex networks viewed as open systems. Importantly, we focus on systems that are inherently modeled in discrete time-such as opinion…

Physics and Society · Physics 2025-11-25 Amirhossein Nazerian , MAlbor Asllani , Melvyn Tyloo , Francesco Sorrentino

We present a numerical study of multi-commodity transport in a noisy, nonlinear network. The nonlinearity determines the dynamics of the edge capacities, which can be amplified or suppressed depending on the local current flowing across an…

Statistical Mechanics · Physics 2024-10-24 Frederic Folz , Kurt Mehlhorn , Giovanna Morigi

Collective dynamics result from interactions among noisy dynamical components. Examples include heartbeats, circadian rhythms, and various pattern formations. Because of noise in each component, collective dynamics inevitably involve…

Biological Physics · Physics 2010-09-09 Naoki Masuda , Yoji Kawamura , Hiroshi Kori

We present a study of exclusion processes on networks as models for complex transport phenomena and in particular for active transport of motor proteins along the cytoskeleton. We argue that active transport processes on networks…

Statistical Mechanics · Physics 2013-08-12 I. Neri , N. Kern , A. Parmeggiani

We show that for a certain class of dynamics at the nodes the response of a network of any topology to arbitrary inputs is defined in a simple way by its response to a monotone input. The nodes may have either a discrete or continuous set…

Statistical Mechanics · Physics 2014-10-17 Pavel Krejčí , Harbir Lamba , Sergey Melnik , Dmitrii Rachinskii

Across all scales of the physical world, dynamical systems can often be usefully represented as abstract networks that encode the system's units and inter-unit interactions. Understanding how physical rules shape the topological structure…

Mesoscale and Nanoscale Physics · Physics 2023-11-28 Abigail N. Poteshman , Mathieu Ouellet , Lee C. Bassett , Danielle S. Bassett

For dynamical systems that can be modelled as asymptotically stable linear systems forced by Gaussian noise, this paper develops methods to infer or estimate their modes from observations in real time. The modes can be real or complex. For…

Machine Learning · Statistics 2019-10-30 Robert S. MacKay
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