Related papers: Monadic Datalog Containment on Trees Using the Des…
A data tree is a finite tree whose every node carries a label from a finite alphabet and a datum from some infinite domain. We introduce a new model of automata over unranked data trees with a decidable emptiness problem. It is essentially…
We study query containment in three closely related formalisms: monadic disjunctive Datalog (MDDLog), MMSNP (a logical generalization of constraint satisfaction problems), and ontology-mediated queries (OMQs) based on expressive description…
A Conditional Tree Pattern (CTP) expands an XML tree pattern with labels attached to the descendant edges. These labels can be XML element names or Boolean CTPs. The meaning of a descendant edge labelled by A and ending in a node labelled…
We combine two methods for the lossless compression of unlabeled graphs - entropy compressing adjacency lists and computing canonical names for vertices - and solve an ensuing novel optimisation problem: Minimum-Entropy Tree-Extraction…
We consider the eternal distance-2 domination problem, recently proposed by Cox, Meger, and Messinger, on trees. We show that finding a minimum eternal distance-2 dominating set of a tree is linear time in the order of the graph by…
We consider combinatorial problems that can be solved in polynomial time for graphs of bounded treewidth but where the order of the polynomial that bounds the running time is expected to depend on the treewidth bound. First we review some…
Interpreting three-leaf binary trees or {\em rooted triples} as constraints yields an entailment relation, whereby binary trees satisfying some rooted triples must also thus satisfy others, and thence a closure operator, which is known to…
XPath is a simple language for navigating an XML-tree and returning a set of answer nodes. The focus in this paper is on the complexity of the containment problem for various fragments of XPath. We restrict attention to the most common…
Query evaluation on probabilistic databases is generally intractable (#P-hard). Existing dichotomy results have identified which queries are tractable (or safe), and connected them to tractable lineages. In our previous work, using…
We study Two-Variable First-Order Logic, FO2, under semantic constraints that model hierarchically structured data. Our first logic extends FO2 with a linear order < and a chain of increasingly coarser equivalence relations E_1, E_2, ... .…
Phylogenetic networks are a generalization of phylogenetic trees to leaf-labeled directed acyclic graphs that represent ancestral relationships between species whose past includes non-tree-like events such as hybridization and horizontal…
In this work, we answer an open problem in the study of phylogenetic networks. Phylogenetic trees are rooted binary trees in which all edges are directed away from the root, whereas phylogenetic networks are rooted acyclic digraphs. For the…
This paper studies the "explanation problem" for tree- and linearly-ordered array data, a problem motivated by database applications and recently solved for the one-dimensional tree-ordered case. In this paper, one is given a matrix A whose…
The finite satisfiability problem of monadic second order logic is decidable only on classes of structures of bounded tree-width by the classic result of Seese (1991). We prove the following problem is decidable: Input: (i) A monadic second…
Phylogenetic (evolutionary) trees and networks are leaf-labeled graphs that are widely used to represent the evolutionary relationships between entities such as species, languages, cancer cells, and viruses. To reconstruct and analyze…
The finite satisfiability problem for the two-variable fragment of first-order logic interpreted over trees was recently shown to be ExpSpace-complete. We consider two extensions of this logic. We show that adding either additional binary…
Counting the number of answers to conjunctive queries is a fundamental problem in databases that, under standard assumptions, does not have an efficient solution. The issue is inherently #P-hard, extending even to classes of acyclic…
A directed phylogenetic network is tree-child if every non-leaf vertex has a child that is not a reticulation. As a class of directed phylogenetic networks, tree-child networks are very useful from a computational perspective. For example,…
We study the tractability of conjunctive query answering for queries with unbounded arity. It is well known that tractability of the problem can be characterised in terms of the queries treewidth under the assumption of bounded arity. We…
The weighted ancestor problem is a well-known generalization of the predecessor problem to trees. It is known to require $\Omega(\log\log n)$ time for queries provided $O(n\mathop{\mathrm{polylog}} n)$ space is available and weights are…