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A useful approach to the mathematical analysis of large-scale biological networks is based upon their decompositions into monotone dynamical systems. This paper deals with two computational problems associated to finding decompositions…

Molecular Networks · Quantitative Biology 2007-05-23 Bhaskar DasGupta , German Andres Enciso , Eduardo Sontag , Yi Zhang

For a given graph consider a pair of disjoint matchings the union of which contains as many edges as possible. Furthermore, consider the relation of the cardinalities of a maximum matching and the largest matching in those pairs. It is…

Discrete Mathematics · Computer Science 2009-03-03 A. V. Tserunyan

The Small Set Expansion Hypothesis (SSEH) is a conjecture which roughly states that it is NP-hard to distinguish between a graph with a small subset of vertices whose edge expansion is almost zero and one in which all small subsets of…

Computational Complexity · Computer Science 2017-05-11 Pasin Manurangsi

We consider the task of detecting a hidden bipartite subgraph in a given random graph. This is formulated as a hypothesis testing problem, under the null hypothesis, the graph is a realization of an Erd\H{o}s-R\'{e}nyi random graph over $n$…

Data Structures and Algorithms · Computer Science 2024-03-07 Asaf Rotenberg , Wasim Huleihel , Ofer Shayevitz

An out-(in-)branching B_s^+ (B_s^-) rooted at s in a digraph D is a connected spanning subdigraph of D in which every vertex x != s has precisely one arc entering (leaving) it and s has no arcs entering (leaving) it. We settle the…

Combinatorics · Mathematics 2012-03-22 Jørgen Bang-Jensen , Sven Simonsen

Packing disjoint subgraphs in a given graph is a fundamental problem with many applications. Motivated by political districting, we focus on connected subgraphs that are compact (e.g., having constant radius from a single center vertex) and…

Data Structures and Algorithms · Computer Science 2026-04-13 Ho-Lin Chen , Po-Yu Chou , Prathamesh Dharangutte , Jie Gao , Shang-En Huang , Fang-Yi Yu

The presented material is devoted to the equivalent conversion from the vertex graphs to the edge graphs. We suggest that the proved theorems solve the problem of the isomorphism of graphs, the problem of the graph's enumeration with the…

Computational Complexity · Computer Science 2012-10-22 Leonid Malinin , Natalia Malinina

We continue research into a well-studied family of problems that ask whether the vertices of a graph can be partitioned into sets $A$ and~$B$, where $A$ is an independent set and $B$ induces a graph from some specified graph class ${\cal…

Data Structures and Algorithms · Computer Science 2017-08-01 Marthe Bonamy , Konrad K. Dabrowski , Carl Feghali , Matthew Johnson , Daniel Paulusma

In this paper, we consider the problem of computing an optimal matching in a bipartite graph where elements of one side of the bipartition specify preferences over the other side, and one or both sides can have capacities and…

Data Structures and Algorithms · Computer Science 2018-10-09 Meghana Nasre , Prajakta Nimbhorkar , Nada Pulath

Cascade processes are responsible for many important phenomena in natural and social sciences. Simple models of irreversible dynamics on graphs, in which nodes activate depending on the state of their neighbors, have been successfully…

Disordered Systems and Neural Networks · Physics 2013-09-16 Fabrizio Altarelli , Alfredo Braunstein , Luca Dall'Asta , Riccardo Zecchina

We study the set of all decompositions (clusterings) of a graph through its characterization as a set of lifted multicuts. This leads us to practically relevant insights related to the definition of a class of decompositions by must-join…

Discrete Mathematics · Computer Science 2017-06-09 Andrea Horňáková , Jan-Hendrik Lange , Bjoern Andres

The degree sequence optimization problem is to find a subgraph of a given graph which maximizes the sum of given functions evaluated at the subgraph degrees. Here we study this problem by replacing degree sequences, via suitable nonlinear…

Combinatorics · Mathematics 2024-04-04 Shmuel Onn

A matching cut is a matching that is also an edge cut. In the problem Minimum Matching Cut, we ask for a matching cut with the minimum number of edges in the matching. We investigate the differences in complexity between Minimum Matching…

Combinatorics · Mathematics 2026-02-20 Felicia Lucke , Joseph Marchand , Jannik Olbrich

We consider a monotone submodular maximization problem whose constraint is described by a logic formula on a graph. Formally, we prove the following three `algorithmic metatheorems.' (1) If the constraint is specified by a monadic…

Data Structures and Algorithms · Computer Science 2018-07-13 Masakazu Ishihata , Takanori Maehara , Tomas Rigaux

Minimizing the weight of an edge set satisfying parity constraints is a challenging branch of combinatorial optimization as witnessed by the binary hypergraph chapter of Alexander Schrijver's book ``Combinatorial Optimization" (Chapter 80).…

Computational Complexity · Computer Science 2023-06-21 Ildikó Schlotter , András Sebő

Here we prove that counting maximum matchings in planar, bipartite graphs is #P-complete. This is somewhat surprising in the light that the number of perfect matchings in planar graphs can be computed in polynomial time. We also prove that…

Computational Complexity · Computer Science 2021-03-09 Istvan Miklos , Miklos Kresz

We study the existence of perfect matchings in suitably chosen induced subgraphs of random biregular bipartite graphs. We prove a result similar to a classical theorem of Erdos and Renyi about perfect matchings in random bipartite graphs.…

Combinatorics · Mathematics 2013-09-10 Guillem Perarnau , Giorgis Petridis

We present a new formulation of the maximum clique problem of a graph in complex space. We start observing that the adjacency matrix A of a graph can always be written in the form A = B B where B is a complex, symmetric matrix formed by…

Mathematical Physics · Physics 2009-04-03 Marco Budinich , Paolo Budinich

Let H be a graph, and let C_H(G) be the number of (subgraph isomorphic) copies of H contained in a graph G. We investigate the fundamental problem of estimating C_H(G). Previous results cover only a few specific instances of this general…

Data Structures and Algorithms · Computer Science 2019-02-20 Martin Furer , Shiva Prasad Kasiviswanathan

Induced bipartite subgraphs of maximal vertex cardinality are an essential concept for the analysis of graphs. Yet, discovering them in large graphs is known to be computationally hard. Therefore, we consider in this work a weaker notion of…

Artificial Intelligence · Computer Science 2022-11-22 Dominik Dürrschnabel , Tom Hanika , Gerd Stumme
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