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Word sense disambiguation improves many Natural Language Processing (NLP) applications such as Information Retrieval, Information Extraction, Machine Translation, or Lexical Simplification. Roughly speaking, the aim is to choose for each…

Computation and Language · Computer Science 2017-03-01 Mokhtar Billami

Knowledge sharing is crucial in healthcare, especially when leveraging data from multiple clinical sites to address data scarcity, reduce costs, and enable timely interventions. Transfer learning can facilitate cross-site knowledge…

Computation and Language · Computer Science 2024-09-24 Yuhe Gao , Runxue Bao , Yuelyu Ji , Yiming Sun , Chenxi Song , Jeffrey P. Ferraro , Ye Ye

The advent of large language models (LLMs) has opened new avenues for analyzing complex, unstructured data, particularly within the medical domain. Electronic Health Records (EHRs) contain a wealth of information in various formats,…

Information Retrieval · Computer Science 2025-06-10 Wu Hao Ran , Xi Xi , Furong Li , Jingyi Lu , Jian Jiang , Hui Huang , Yuzhuan Zhang , Shi Li

The goal of our work is to perform pixel label semantic segmentation on 3D biomedical volumetric data. Manual annotation is always difficult for a large bio-medical dataset. So, we consider two cases where one dataset is fully labeled and…

Computer Vision and Pattern Recognition · Computer Science 2020-04-07 Shreya Roy , Anirban Chakraborty

Natural language processing techniques are being applied to increasingly diverse types of electronic health records, and can benefit from in-depth understanding of the distinguishing characteristics of medical document types. We present a…

Computation and Language · Computer Science 2019-10-02 Denis Newman-Griffis , Eric Fosler-Lussier

Effectively representing medical concepts and patients is important for healthcare analytical applications. Representing medical concepts for healthcare analytical tasks requires incorporating medical domain knowledge and prior information…

Machine Learning · Computer Science 2023-05-02 Shaodong Wang , Qing Li , Wenli Zhang

Despite remarkable advancements in pixel-level medical image perception, existing methods are either limited to specific tasks or heavily rely on accurate bounding boxes or text labels as input prompts. However, the medical knowledge…

Computer Vision and Pattern Recognition · Computer Science 2025-04-24 Qinyue Tong , Ziqian Lu , Jun Liu , Yangming Zheng , Zheming Lu

We propose a method for learning disentangled representations of texts that code for distinct and complementary aspects, with the aim of affording efficient model transfer and interpretability. To induce disentangled embeddings, we propose…

Computation and Language · Computer Science 2018-09-05 Sarthak Jain , Edward Banner , Jan-Willem van de Meent , Iain J. Marshall , Byron C. Wallace

We introduce a method that takes advantage of high-quality pretrained multimodal representations to explore fine-grained semantic networks in the human brain. Previous studies have documented evidence of functional localization in the…

Artificial Intelligence · Computer Science 2023-06-07 Cory Efird , Alex Murphy , Joel Zylberberg , Alona Fyshe

Recent advances in large language models (LLMs) and biomedical foundation models (BioFMs) have achieved strong results in biological text reasoning, molecular modeling, and single-cell analysis, yet they remain siloed in disjoint embedding…

Quantitative Methods · Quantitative Biology 2025-10-03 Ching-Huei Tsou , Michal Ozery-Flato , Ella Barkan , Diwakar Mahajan , Ben Shapira

Rule-based machine translation is more data efficient than the big data-based machine translation approaches, making it appropriate for languages with low bilingual corpus resources -- i.e., minority languages. However, the rule-based…

Computation and Language · Computer Science 2019-04-29 Patrick Connor

Transformer-based large language models (LLMs) rely on contextual embeddings which generate different (continuous) representations for the same token depending on its surrounding context. Nonetheless, words and tokens typically have a…

Computation and Language · Computer Science 2025-07-10 Qitong Wang , Mohammed J. Zaki , Georgios Kollias , Vasileios Kalantzis

BACKGROUND: In this study, we investigated the efficacy of current state-of-the-art neural sentence embedding models for semantic similarity estimation of sentences from biomedical literature. We trained different neural embedding models on…

Computation and Language · Computer Science 2021-11-01 Kathrin Blagec , Hong Xu , Asan Agibetov , Matthias Samwald

Recent studies show that deep learning models achieve good performance on medical imaging tasks such as diagnosis prediction. Among the models, multimodality has been an emerging trend, integrating different forms of data such as chest…

Machine Learning · Computer Science 2022-02-10 Haodi Zhang , Chenyu Xu , Peirou Liang , Ke Duan , Hao Ren , Weibin Cheng , Kaishun Wu

Word sense disambiguation primarily addresses the lexical ambiguity of common words based on a predefined sense inventory. Conversely, proper names are usually considered to denote an ad-hoc real-world referent. Once the reference is…

Computation and Language · Computer Science 2024-01-19 Shu-Kai Hsieh , Yu-Hsiang Tseng , Hsin-Yu Chou , Ching-Wen Yang , Yu-Yun Chang

Crucial information about the practice of healthcare is recorded only in free-form text, which creates an enormous opportunity for high-impact NLP. However, annotated healthcare datasets tend to be small and expensive to obtain, which…

Computation and Language · Computer Science 2019-04-09 Yifeng Tao , Bruno Godefroy , Guillaume Genthial , Christopher Potts

Multimodal medical image fusion plays a crucial role in medical diagnosis by integrating complementary information from different modalities to enhance image readability and clinical applicability. However, existing methods mainly follow…

Computer Vision and Pattern Recognition · Computer Science 2025-05-20 Haozhe Xiang , Han Zhang , Yu Cheng , Xiongwen Quan , Wanwan Huang

In this paper, we are going to find meaning of words based on distinct situations. Word Sense Disambiguation is used to find meaning of words based on live contexts using supervised and unsupervised approaches. Unsupervised approaches use…

Computation and Language · Computer Science 2016-11-04 Alok Ranjan Pal , Anirban Kundu , Abhay Singh , Raj Shekhar , Kunal Sinha

Rapid growth of the biomedical literature has led to many advances in the biomedical text mining field. Among the vast amount of information, biomedical article abstracts are the easily accessible sources. However, the number of the…

Computation and Language · Computer Science 2022-01-19 Mehmet Efruz Karabulut , K. Vijay-Shanker

Distributional semantics provides multi-dimensional, graded, empirically induced word representations that successfully capture many aspects of meaning in natural languages, as shown in a large body of work in computational linguistics;…

Computation and Language · Computer Science 2020-03-19 Gemma Boleda