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We formulate a theory of shape valid for objects of arbitrary dimension whose contours are path connected. We apply this theory to the design and modeling of viable trajectories of complex dynamical systems. Infinite families of…

Numerical Analysis · Mathematics 2021-10-11 Vladimir García-Morales

We present the design, characterization, and experimental results for a new modular robotic system for programmable self-assembly. The proposed system uses the Hybrid Cube Model (HCM), which integrates classical features from both…

Robotics · Computer Science 2019-12-24 Usman A. Fiaz , Jeff S. Shamma

One emerging approach for the fabrication of complex architectures on the nanoscale is to utilize particles customized to intrinsically self-assemble into a desired structure. Inverse methods of statistical mechanics have proven…

Materials Science · Physics 2017-09-08 R. B. Jadrich , B. A. Lindquist , T. M. Truskett

Self-closing assembly is prone to polymorphism due to thermally-excited bending fluctuations, which permit the formation of off-target assemblies at the point of self-closure. One way to overcome this source of polymorphism is to use…

Soft Condensed Matter · Physics 2025-11-06 Sirui Liu , Thomas E. Videbæk , W. Benjamin Rogers

How, in principle, could one solve the atomic structure of a quasicrystal, modeled as a random tiling decorated by atoms, and what techniques are available to do it? One path is to solve the phase problem first, obtaining the density in a…

Materials Science · Physics 2007-05-23 C. L. Henley , V. Elser , M. Mihalkovic

The de Rham complex arises naturally when studying problems in electromagnetism and fluid mechanics. Stable numerical methods to solve these problems can be obtained by using a discrete de Rham complex that preserves the structure of the…

Numerical Analysis · Mathematics 2026-04-21 Diogo C. Cabanas , Kendrick M. Shepherd , Deepesh Toshniwal , Rafael Vázquez

Kinematics of mechanisms is intricately coupled to their geometry and their utility often arises out of the ability to perform reproducible motion with fewer actuating degrees of freedom. In this article, we explore the assembly of…

Robotics · Computer Science 2026-02-17 Mohanraj A , S Ganga Prasath

The Finite element method (FEM) has long served as the computational backbone for topology optimization (TO). However, for designing structures undergoing large deformations, conventional FEM-based TO often exhibits numerical instabilities…

Computational Engineering, Finance, and Science · Computer Science 2026-03-17 Rahul Kumar Padhy , Aaditya Chandrasekhar , Krishnan Suresh

We propose a new mechanism to create self-assembled porous media with highly tunable geometrical properties and permeabilities: We first allow a particle-stabilized emulsion to form from a mixture of two fluids and colloidal particles.…

Soft Condensed Matter · Physics 2024-08-08 Stefan Frijters , Jens Harting

Effective features can improve the performance of a model, which can thus help us understand the characteristics and underlying structure of complex data. Previous feature selection methods usually cannot keep more local structure…

Machine Learning · Computer Science 2019-10-10 Xia Wu , Xueyuan Xu , Jianhong Liu , Hailing Wang , Bin Hu , Feiping Nie

Self-similar space-filling bearings have been proposed some time ago as models for the motion of tectonic plates and appearance of seismic gaps. These models have two features which, however, seem unrealistic, namely, high symmetry in the…

Disordered Systems and Neural Networks · Physics 2007-05-23 R. Mahmoodi Baram , H. J. Herrmann

It has been argued that a central objective of nanotechnology is to make products inexpensively, and that self-replication is an effective approach to very low-cost manufacturing. The research presented here is intended to be a step towards…

Multiagent Systems · Computer Science 2020-08-20 Robert Ewaschuk , Peter D. Turney

We use computer simulations to study a model, first proposed by Wales [1], for the reversible and monodisperse self-assembly of simple icosahedral virus capsid structures. The success and efficiency of assembly as a function of…

Biomolecules · Quantitative Biology 2010-02-24 Iain G. Johnston , Ard A. Louis , Jonathan P. K. Doye

Tilings of the plane resemble the simplicial and other complexes from algebraic topology, but have not been studied from this perspective. We construct finite categories corresponding to polygons with labeled directed edges, and introduce…

Category Theory · Mathematics 2025-09-09 Catherine DiLeo , Preston Sessoms , Brandon T. Shapiro

We show that model molecules with particular rotational symmetries can self-assemble into network structures equivalent to rhombus tilings. This assembly happens in an emergent way, in the sense that molecules spontaneously select irregular…

Statistical Mechanics · Physics 2015-03-25 Stephen Whitelam , Isaac Tamblyn , Juan P. Garrahan , Peter H. Beton

Controlling the self-assembly of supramolecular structures is vital for living cells, and a central challenge for engineering at the nano- and microscales. Nevertheless, even particles without optimized shapes can robustly form well-defined…

Soft Condensed Matter · Physics 2018-03-09 Martin Lenz , Thomas A. Witten

The self-assembly of complex structures from engineered subunits is a major goal of nanotechnology, but controlling their size becomes increasingly difficult in larger assemblies. Existing strategies present significant challenges, among…

Hierarchically structured natural materials possess functionalities unattainable to the same components organized or mixed in simpler ways. For instance, the bones and teeth of mammals are far stronger and more durable than the mineral…

Soft Condensed Matter · Physics 2014-04-04 Thomas K. Haxton , Stephen Whitelam

We use computer simulations to investigate self-assembly in a system of model chaperonin proteins, and in an Ising lattice gas. We discuss the mechanisms responsible for rapid and efficient assembly in these systems, and we use measurements…

Soft Condensed Matter · Physics 2011-12-09 James Grant , Robert L. Jack , Stephen Whitelam

We fully generalize a previously-developed computational geometry tool [1] to perform large-scale simulations of arbitrary two-dimensional faceted surfaces $z = h(x,y)$. Our method uses a three-component facet/edge/junction storage model,…

Mathematical Physics · Physics 2011-10-17 Scott A. Norris , Stephen J. Watson