Related papers: On Information-Theoretic Characterizations of Mark…

We study the problem of inferring sparse time-varying Markov random fields (MRFs) with different discrete and temporal regularizations on the parameters. Due to the intractability of discrete regularization, most approaches for solving this…

The class of word-representable graphs, introduced in connection with the study of the Perkins semigroup by Kitaev and Seif, has attracted significant attention in combinatorics and theoretical computer science due to its deep connections…

This paper develops a structural theory of unique shortest paths in real-weighted graphs. Our main goal is to characterize exactly which sets of node sequences, which we call path systems, can be realized as unique shortest paths in a graph…

Stereo matching is a core task for many computer vision and robotics applications. Despite their dominance in traditional stereo methods, the hand-crafted Markov Random Field (MRF) models lack sufficient modeling accuracy compared to…

One of the major results of [N. Robertson and P. D. Seymour. Graph minors. XIII. The disjoint paths problem. J. Combin. Theory Ser. B, 63(1):65--110, 1995], also known as the weak structure theorem, revealed the local structure of graphs…

We consider the random Markov matrix obtained by assigning i.i.d. non-negative weights to each edge of the complete oriented graph. In this study, the weights have unbounded first moment and belong to the domain of attraction of an…

This paper studies a Markov chain for phylogenetic reconstruction which uses a popular transition between tree topologies known as subtree pruning-and-regrafting (SPR). We analyze the Markov chain in the simpler setting that the generating…

The left-ideal relation graph on a ring $R$, denoted by $\overrightarrow{\Gamma_{l-i}}(R)$, is a directed graph whose vertex set is all the elements of $R$ and there is a directed edge from $x$ to a distinct $y$ if and only if the left…

An acyclic mapping from an $n$ element set into itself is a mapping $\phi$ such that if $\phi^k(x) = x$ for some $k$ and $x$, then $\phi(x) = x$. Equivalently, $\phi^\ell = \phi^{\ell+1} = ...$ for $\ell$ sufficiently large. We investigate…

We study the large-deviation properties of minimum spanning trees for two ensembles of random graphs with $N$ nodes. First, we consider complete graphs. Second, we study Erd\H{o}s-R\'{e}nyi (ER) random graphs with edge probability $p=c/N$…

Rooted bifurcating trees are mathematical objects used to model evolutionary relationships and arise naturally in both coalescent theory and phylogenetics. Recent numerical representations of tree topologies, known as F-matrices, allow for…

A graph is a path graph if it is the intersection graph of a family of subpaths of a tree. In 1970, Renz asked for a characterizaton of path graphs by forbidden induced subgraphs. Here we answer this question by listing all graphs that are…

We prove that every graph of rank-width $k$ is a pivot-minor of a graph of tree-width at most $2k$. We also prove that graphs of rank-width at most 1, equivalently distance-hereditary graphs, are exactly vertex-minors of trees, and graphs…

We introduce the concept of Most, and Least, Compact Spanning Trees - denoted respectively by $T^*(G)$ and $T^\#(G)$ - of a simple, connected, undirected and unweighted graph $G(V, E, W)$. For a spanning tree $T(G) \in \mathcal{T}(G)$ to be…

A parametrization of hypergraphs based on the geometry of points in $\mathbf{R}^d$ is developed. Informative prior distributions on hypergraphs are induced through this parametrization by priors on point configurations via spatial…

Incremental methods for structure learning of pairwise Markov random fields (MRFs), such as grafting, improve scalability by avoiding inference over the entire feature space in each optimization step. Instead, inference is performed over an…

A graph property is a function $\Phi$ that maps every graph to {0, 1} and is invariant under isomorphism. In the $\#IndSub(\Phi)$ problem, given a graph $G$ and an integer $k$, the task is to count the number of $k$-vertex induced subgraphs…

Let $\mathbb{G}_{n,\alpha}$ be the set of connected graphs with order $n$ and independence number $\alpha$. Given $k=n-\alpha$, the graph with minimum spectral radius among $\mathbb{G}_{n,\alpha}$ is called the minimizer graph.…

Let $G=(V,E)$ be a graph. An ordering of $G$ is a bijection $\alpha: V\dom \{1,2,..., |V|\}.$ For a vertex $v$ in $G$, its closed neighborhood is $N[v]=\{u\in V: uv\in E\}\cup \{v\}.$ The profile of an ordering $\alpha$ of $G$ is…

The purpose of this article is to show how the isotropy subgroup of leaf permutations on binary trees can be used to systematically identify tree-informative invariants relevant to models of phylogenetic evolution. In the quartet case, we…