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Related papers: Nanoscale Structure and Elasticity of Pillared DNA…

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The mechanical properties of the so-called `super' carbon nanotubes (STs) are investigated using classical molecular dynamics simulations. The STs are built from single walled carbon nanotubes (SWCNTs) connected by Y-like junctions forming…

Materials Science · Physics 2009-11-13 Vitor R. Coluci , Nicola M. Pugno , Socrates O. Dantas , Douglas S. Galvao , Ado Jorio

Nucleic acids are highly deformable helical molecules constantly stretched, twisted and bent in their biological functioning. Single molecule experiments have shown that double stranded (ds)-RNA and standard ds-DNA have opposite…

Soft Condensed Matter · Physics 2023-06-28 Marco Zoli

We study the elastic behaviour of a supercoiled DNA molecule. The simplest model is that of a rod like chain, involving two elastic constants, the bending and the twist rigidities. We show that this model is singular and needs a small…

Condensed Matter · Physics 2009-10-31 Claude Bouchiat , Marc Mezard

Single-wall carbon nanotube (SWNT) nanofibrils were assembled onto a variety of conductive scanning probes including atomic force microscope (AFM) tips and scanning tunnelling microscope (STM) needles using positive dielectrophoresis (DEP).…

Materials Science · Physics 2011-06-21 Haoyan Wei , Anna Craig , Bryan D Huey , Fotios Papadimitrakopoulos , Harris Marcus

The promise of enhanced performance has motivated the study of one dimensional nanomaterials, especially aligned carbon nanotubes (A-CNTs), for the reinforcement of polymeric materials. While early work has shown that CNTs have remarkable…

Applied Physics · Physics 2017-12-19 Itai Y. Stein , Brian L. Wardle

Periodic arrays of micro- or nano-pillars constitute solid state matrices with excellent properties for DNA size separation. Nanofabrication technologies offer many solutions to tailor the geometry of obstacle arrays, yet most studies have…

Biological Physics · Physics 2014-09-02 Yannick Viero , Qihao He , Marc Fouet , Aurélien Bancaud

For an understanding of DNA elasticity at high mechanical loads (F > 30 pN), its helical nature needs to be taken into account, in the form of coupling between the twist and stretch degrees of freedom. The prevailing model for DNA…

Biological Physics · Physics 2016-06-29 Onno D. Broekmans , Graeme A. King , Greg J. Stephens , Gijs J. L. Wuite

We studied the electrical conductivity of DNA molecules with conducting atomic force microscopy as a function of the chemical nature of the substrate surfaces, the nature of the electrical contact, and the number of DNA molecules (from a…

Materials Science · Physics 2009-11-10 Thomas Heim , Dominique Deresmes , Dominique Vuillaume

The article demonstrates a technique for fabricating a structure with the inclusion of suspended DNA threads and manipulating them using composite nanotweezers with shape memory effect. This technique could be suitable for stretching of…

DNA origami nanostructures provide programmable control over nanoscale geometry but remain challenging to image due to their low atomic number. Here, we systematically evaluate imaging strategies for both stained and unstained DNA origami…

We measure the rheology of transient hydrogels comprised of a single type of DNA nanostar that makes both strong and weak bonds. These gels exhibit power-law frequency-dependence of their storage and loss moduli, with scaling exponents that…

Soft Condensed Matter · Physics 2023-08-29 Nathaniel Conrad , Omar A. Saleh , Deborah K. Fygenson

Phagraphene (PhaG) is a quasi-planar 2D structure composed of $5-6-7$ ring sequence. We have investigated the structural and mechanical properties of phagraphene nanotubes (PhaNTs) through fully atomistic reactive molecular dynamics (MD)…

In this work, we explore the structure of single-wall boron nanotubes with large diameters (about 21~{\AA}) and a broad range of surface densities of atoms. The computations are done using an evolutionary approach combined with a nearest…

Mesoscale and Nanoscale Physics · Physics 2022-12-06 Tomasz Tarkowski , Nevill Gonzalez Szwacki

Amorphous carbon nanotubes (a-CNT) with up to four walls and sizes ranging from 200 to 3200 atoms have been simulated, starting from initial random configurations and using the Gaussian Approximation Potential [Phys. Rev. B 95, 094203…

Materials Science · Physics 2023-03-22 C. Ugwumadu , R. Thapa , Y. Al-Majali , J. Trembly , D. A. Drabold

The search or design of silicon nanostructures similar to their carbon analogues has attracted great interest recently. In this work, density functional calculations are performed to systematically study a series of finite and infinite…

Mesoscale and Nanoscale Physics · Physics 2011-07-19 Lingju Guo , Xiaohong Zheng , Chunsheng Liu , Wanghuai Zhou , Zhi Zeng

The flexibility of short DNA chains is investigated via computation of the average correlation function between dimers which defines the persistence length. Path integration techniques have been applied to confine the phase space available…

Soft Condensed Matter · Physics 2018-10-19 Marco Zoli

Single-filament tracing has been a valuable tool to directly determine geometrical and mechanical properties of entangled polymer networks. However, systematically verifying how the stiffness of the tracer filament or its molecular…

Soft Condensed Matter · Physics 2022-01-05 Tina Händler , Cary Tutmarc , Martin Glaser , Jessica S. Freitag , David M. Smith , Jörg Schnauß

The extended Frank elastic energy density is used to investigate the existence of a stable periodically modulate structure that appears as a ground state exhibiting a twist-bend molecular arrangement. For an unbounded sample, we show that…

Soft Condensed Matter · Physics 2017-06-01 M. P. Rosseto , R. R. Ribeiro de Almeida , R. S. Zola , G. Barbero , I. Lelidis , L. R. Evangelista

Three typical one-dimensional (1D)/quasi-1D nanocarbons, linear carbon chains, carbon nanotubes, and graphene nanoribbons have been proven to grow inside single-wall carbon nanotubes. This gives rise to three types of hybrid materials whose…

Materials Science · Physics 2021-01-29 Weili Cui , Takeshi Saito , Paola Ayala , Thomas Pichler , Lei Shi

Recently experiments showed that nodal structural defects are readily formed in the synthesis of single-walled carbon nanotubes (SWNTs) and consequently, SWNTs are likely to deviate from well-defined seamless tubular structures. Here, using…

Mesoscale and Nanoscale Physics · Physics 2014-10-02 Young I. Jhon , Woonjo Cho , Seok Lee , Young Min Jhon