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Estimation of division and death rates of lymphocytes in different conditions is vital for quantitative understanding of the immune system. Deuterium, in the form of deuterated glucose or heavy water, can be used to measure rates of…

Populations and Evolution · Quantitative Biology 2015-05-13 Vitaly V. Ganusov , Jose Borghans , Rob De Boer

Recent experiments revealing possible nanoscale electrostatic interactions in force generation at kinetochores for chromosome motions have prompted speculation regarding possible models for interactions between positively charged molecules…

Cell Behavior · Quantitative Biology 2010-02-09 L. John Gagliardi

Cell division is a process that involves many biochemical steps and complex biophysical mechanisms. To simplify the understanding of what triggers cell division, three basic models that subsume more microscopic cellular processes associated…

Cell Behavior · Quantitative Biology 2020-03-30 Mingtao Xia , Chris D. Greenman , Tom Chou

As cancer advances, cells often spread from the primary tumor to other parts of the body and form metastases. This is the main cause of cancer related mortality. Here we investigate a conceptually simple model of metastasis formation where…

Populations and Evolution · Quantitative Biology 2019-12-05 Stefano Avanzini , Tibor Antal

We show that a coalescence equation exhibits a variety of critical behaviors, depending on the initial condition. This equation was introduced a few years ago to understand a toy model {studied by Derrida and Retaux to mimic} the depinning…

Mathematical Physics · Physics 2020-06-24 Xinxing Chen , Victor Dagard , Bernard Derrida , Zhan Shi

Long-term videomicroscopy and computer-aided statistical analysis were used to determine some characteristic parameters of in vitro cell motility and proliferation in three established cell lines derived from human glioblastoma tumors.…

Biological Physics · Physics 2007-05-23 B. Hegedus , A. Czirok , I. Fazekas , T. Babel , E. Madarasz , T. Vicsek

In this study, we develop consistent estimators for key parameters that govern the dynamics of tumor cell populations when subjected to pharmacological treatments. While these treatments often lead to an initial reduction in the abundance…

Applications · Statistics 2024-03-21 Kevin Leder , Ruping Sun , Zicheng Wang , Xuanming Zhang

Cancer has been characterized as a constellation of hundreds of diseases differing in underlying mutations and depending on cellular environments. Carcinogenesis as a stochastic physical process has been studied for over sixty years, but…

Tissues and Organs · Quantitative Biology 2015-06-02 Carson C. Chow , Yanjun Li , Vipul Periwal

The critical behavior of a dimer model with an interaction favoring parallel dimers in each plaquette of the square lattice is studied numerically by means of the Corner Transfer Matrix Renormalization Group algorithm. The critical…

Statistical Mechanics · Physics 2024-09-20 Christophe Chatelain

In this article, we investigate the ergodic behaviour of a multidimensional age-dependent branching process with a singular jump kernel, motivated by studying the phenomenon of telomere shortening in cell populations. Our model tracks…

Probability · Mathematics 2026-01-21 Jules Olayé , Milica Tomasevic

We study the effect of correlations in generation times on the dynamics of population growth of microorganisms. We show that any non-zero correlation that is due to cell-size regulation, no matter how small, induces long-term oscillations…

Populations and Evolution · Quantitative Biology 2019-03-27 Farshid Jafarpour

It is pointed out that the mystery of how biological systems measure their lengths vanishes away if one premises that they have discovered a way to generate linear waves analogous to compressional sound. These can be used to detect length…

Biological Physics · Physics 2016-02-17 R. B. Laughlin

Cellular bioelectricity describes the biological phenomenon in which cells in living tissue generate and maintain patterns of voltage gradients induced by differing concentrations of charged ions. A growing body of research suggests that…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-09-27 Seth Gilbert , James Maguire , Calvin Newport

The homeostasis of epithelial tissue relies on a balance between the self-renewal of stem cell populations, cellular differentiation, and loss. Although this balance needs to be tightly regulated to avoid pathologies, such as tumor growth,…

Biological Physics · Physics 2024-04-10 Johannes C. Krämer , Edouard Hannezo , Gerhard Gompper , Jens Elgeti

Living cells use readout molecules to record the state of receptor proteins, similar to measurements or copies in typical computational devices. But is this analogy rigorous? Can cells be optimally efficient, and if not, why? We show that,…

Statistical Mechanics · Physics 2017-04-19 Thomas E. Ouldridge , Pieter Rein ten Wolde

Compiled data for the stem cell numbers, Ns, and division rates, ms, is reanalized in order to show that we can distinguish two groups of human tissues. In the first one, there is a relatively high fraction of maintenance (stem and transit)…

Tissues and Organs · Quantitative Biology 2020-08-12 Augusto Gonzalez , Teresita Rodriguez , Rolando Perez

Metastasis represents one of the main clinical challenge in cancer treatment since it is associated with the majority of deaths. Recent technological advances allow quantification of the dynamics of the process by means of noninvasive…

Tissues and Organs · Quantitative Biology 2015-11-06 Sébastien Benzekry , J. M. L. Ebos

Metabolism of living organisms is a foundation of life. The metabolic rate (energy production per unit time) increases slower than organisms' mass. When this phenomenon is considered across different species, it is called interspecific…

Other Quantitative Biology · Quantitative Biology 2016-11-30 Yuri K. Shestopaloff

Several orders of magnitude typically separate the contour length of eukaryotic chromosomes and the size of the nucleus where they are confined. The ensuing topological constraints can slow down the relaxation dynamics of genomic filaments…

Quantitative Methods · Quantitative Biology 2019-10-22 Angelo Rosa , Marco Di Stefano , Cristian Micheletti

Centromeres are essential for chromosome segregation, yet their DNA sequences evolve rapidly. In most animals and plants that have been studied, centromeres contain megabase-scale arrays of tandem repeats. Despite their importance, very…