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We introduce SeismoStats, a Python package that enables essential statistical seismology analyses, with a focus on well-established methods. The package provides user-friendly tools to download and manipulate earthquake catalogs, but also…

This work addresses the challenge of analyzing geometric structures using Kendall's 3D Shape Space. While Riemannian geometry provides a robust framework for shape analysis (independent of scale, position, and orientation) the transition…

Processing large amounts of data to extract useful information is an essential task within companies. To help in this task, visualization techniques have been commonly used due to their capacity to present data in synthesized views, easier…

Other Computer Science · Computer Science 2011-02-24 Vincent Mahe , Salvador Martinez Perez , Guillaume Doux , Hugo Brunelière , Jordi Cabot

Scatterplots are a common tool for exploring multidimensional datasets, especially in the form of scatterplot matrices (SPLOMs). However, scatterplots suffer from overplotting when categorical variables are mapped to one or two axes, or the…

Human-Computer Interaction · Computer Science 2025-11-18 Deokgun Park , Sung-Hee Kim , Niklas Elmqvist

Increasing quantities of scientific data are becoming readily accessible via online repositories such as those provided by Figshare and Zenodo. Geoscientific simulations in particular generate large quantities of data, with several research…

Digital Libraries · Computer Science 2016-09-22 Christian T. Jacobs , Alexandros Avdis

Recently, the computational neuroscience community has pushed for more transparent and reproducible methods across the field. In the interest of unifying the domain of auditory neuroscience, naplib-python provides an intuitive and general…

Neurons and Cognition · Quantitative Biology 2023-09-20 Gavin Mischler , Vinay Raghavan , Menoua Keshishian , Nima Mesgarani

ScopeSim is a flexible multipurpose instrument data simulation framework built in Python. It enables both raw and reduced observation data to be simulated for a wide range of telescopes and instruments quickly and efficiently on a personal…

Instrumentation and Methods for Astrophysics · Physics 2021-09-29 Kieran Leschinski , Hugo Buddelmeijer , Oliver Czoske , Miguel Verdugo , Gijs Verdoes-Kleijn , Werner Zeilinger

This is the preprint version of our paper on ICONIP2015. The proposed platform supports the integrated VRGIS functions including 3D spatial analysis functions, 3D visualization for spatial process and serves for 3D globe and digital city.…

Human-Computer Interaction · Computer Science 2015-08-11 Weixi Wang , Zhihan Lv , Xiaoming Li , Weiping Xu , Baoyun Zhang

We describe how Python can be leveraged to streamline the curation, modelling and dissemination of drug discovery data as well as the development of innovative, freely available tools for the related scientific community. We look at various…

Other Computer Science · Computer Science 2016-07-05 Michał Nowotka , George Papadatos , Mark Davies , Nathan Dedman , Anne Hersey

We present the open-source image processing software package PySAP (Python Sparse data Analysis Package) developed for the COmpressed Sensing for Magnetic resonance Imaging and Cosmology (COSMIC) project. This package provides a set of…

Instrumentation and Methods for Astrophysics · Physics 2020-07-03 S. Farrens , A. Grigis , L. El Gueddari , Z. Ramzi , Chaithya G. R. , S. Starck , B. Sarthou , H. Cherkaoui , P. Ciuciu , J. -L. Starck

PyPOTS is an open-source Python library dedicated to data mining and analysis on multivariate partially-observed time series with missing values. Particularly, it provides easy access to diverse algorithms categorized into five tasks:…

Machine Learning · Computer Science 2025-07-10 Wenjie Du , Yiyuan Yang , Linglong Qian , Jun Wang , Qingsong Wen

Motivation: The visualization and analysis of high-dimensional data are essential in biomedical research. There is a need for secure, scalable, and reproducible tools to facilitate data exploration and interpretation. Results: We introduce…

Quantitative Methods · Quantitative Biology 2025-04-15 Xijin Ge

This paper describes open-source scientific contributions in python surrounding the numerical solutions to hyperbolic Hamilton-Jacobi (HJ) partial differential equations viz., their implicit representation on co-dimension one surfaces;…

Mathematical Software · Computer Science 2024-11-07 Lekan Molu

EasyVitessce is a Python package that turns existing static Scanpy and SpatialData plots into interactive visualizations by virtue of adding a single line of Python code. The package uses Vitessce internally to render interactive plots, and…

Human-Computer Interaction · Computer Science 2025-10-23 Selena Luo , Mark S. Keller , Tabassum Kakar , Lisa Choy , Nils Gehlenborg

In this paper we present a novel method to connect data on the visualization level. In general, visualizations are a dead end, when it comes to reusability. Yet, users prefer to work with visualizations as evidenced by WYSIWYG editors. To…

Human-Computer Interaction · Computer Science 2017-05-03 Daniel Hienert , Benjamin Zapilko , Philipp Schaer , Brigitte Mathiak

Automated searches for strong gravitational lensing in optical imaging survey datasets often employ machine learning and deep learning approaches. These techniques require more example systems to train the algorithms than have presently…

Instrumentation and Methods for Astrophysics · Physics 2021-02-08 Robert Morgan , Brian Nord , Simon Birrer , Joshua Yao-Yu Lin , Jason Poh

Nowadays the analysis of dynamics of and on networks represents a hot topic in the Social Network Analysis playground. To support students, teachers, developers and researchers in this work we introduce a novel framework, namely NDlib, an…

Social and Information Networks · Computer Science 2018-01-19 Giulio Rossetti , Letizia Milli , Salvatore Rinzivillo , Alina Sirbu , Fosca Giannotti , Dino Pedreschi

Geographic regression models of various descriptions are often applied to identify patterns and anomalies in the determinants of spatially distributed observations. These types of analyses focus on answering why questions about underlying…

Human-Computer Interaction · Computer Science 2023-08-29 Fan Lei , Yuxin Ma , Stewart Fotheringham , Elizabeth Mack , Ziqi Li , Mehak Sachdeva , Sarah Bardin , Ross Maciejewski

The Statistical Toolkit is an open source system specialized in the statistical comparison of distributions. It addresses requirements common to different experimental domains, such as simulation validation (e.g. comparison of experimental…

Computational Physics · Physics 2015-06-11 M Batic , A. M. Paganoni , A. Pfeiffer , M. G. Pia , A. Ribon

Geospatial data analysis plays a crucial role in tackling intricate societal challenges such as urban planning and climate modeling. However, employing tools like GeoPandas, a prominent Python library for geospatial data manipulation,…

Human-Computer Interaction · Computer Science 2025-06-16 Gaspard Merten , Gilles Dejaegere , Mahmoud Sakr