English
Related papers

Related papers: Sam2bam: High-Performance Framework for NGS Data P…

200 papers

We introduce the Balsam service to manage high-throughput task scheduling and execution on supercomputing systems. Balsam allows users to populate a task database with a variety of tasks ranging from simple independent tasks to dynamic…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-09-20 Michael A. Salim , Thomas D. Uram , J. Taylor Childers , Prasanna Balaprakash , Venkatram Vishwanath , Michael E. Papka

The Data Science domain has expanded monumentally in both research and industry communities during the past decade, predominantly owing to the Big Data revolution. Artificial Intelligence (AI) and Machine Learning (ML) are bringing more…

Computational workloads are growing exponentially, driving power consumption to unsustainable levels. Efficiently distributing large-scale networks is an NP-Complete problem equivalent to Boolean satisfiability (SAT), making it one of the…

Systems and Control · Electrical Eng. & Systems 2026-03-16 Everest Bloomer , Irem Didin , Ching-Yi Lin , Sahil Shah

Recently DRAM-based PIMs (processing-in-memories) with unmodified cell arrays have demonstrated impressive performance for accelerating AI applications. However, due to the very restrictive hardware constraints, PIM remains an accelerator…

Hardware Architecture · Computer Science 2023-10-17 Jaewoo Park , Sugil Lee , Jongeun Lee

Spiking Neural Networks (SNNs) have emerged as a biologically inspired alternative to conventional deep networks, offering event-driven and energy-efficient computation. However, their throughput remains constrained by the serial update of…

Neural and Evolutionary Computing · Computer Science 2026-03-16 Hongyang Shang , Shuai Dong , Yahan Yang , Junyi Yang , Peng Zhou , Arindam Basu

Deep neural networks are a biologically-inspired class of algorithms that have recently demonstrated state-of-the-art accuracies involving large-scale classification and recognition tasks. Indeed, a major landmark that enables efficient…

Emerging Technologies · Computer Science 2018-10-23 Amogh Agrawal , Akhilesh Jaiswal , Deboleena Roy , Bing Han , Gopalakrishnan Srinivasan , Aayush Ankit , Kaushik Roy

Resistive random-access memory (ReRAM) is a promising candidate for the next generation non-volatile memory technology due to its simple read/write operations and high storage density. However, its crossbar array structure causes a severe…

Information Theory · Computer Science 2020-10-26 Guanghui Song , Kui Cai , Xingwei Zhong , Jiang Yu , Jun Cheng

Rapid analysis of DNA sequences is important in preventing the evolution of different viruses and bacteria during an early phase, early diagnosis of genetic predispositions to certain diseases (cancer, cardiovascular diseases), and in DNA…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-09-07 Suejb Memeti , Sabri Pllana

This paper presents a new tool to perform various steps in jet tagger development in an efficient and comprehensive way. A common data structure is used for training, as well as for performance evaluation in data. The introduction of this…

High Energy Physics - Experiment · Physics 2023-07-11 Annika Stein

In recent years, visually-rich document understanding has attracted increasing attention. Transformer-based pre-trained models have become the mainstream approach, yielding significant performance gains in this field. However, the…

Computation and Language · Computer Science 2025-02-11 Pengfei Hu , Zhenrong Zhang , Jiefeng Ma , Shuhang Liu , Jun Du , Jianshu Zhang

Inspired by the developments in quantum computing, building domain-specific classical hardware to solve computationally hard problems has received increasing attention. Here, by introducing systematic sparsification techniques, we…

Efficient inference of Deep Neural Networks (DNNs) on resource-constrained edge devices is essential. Quantization and sparsity are key techniques that translate to repetition and sparsity within tensors at the hardware-software interface.…

Machine Learning · Computer Science 2025-05-07 Sachit Kuhar , Yash Jain , Alexey Tumanov

Data frames in scripting languages are essential abstractions for processing structured data. However, existing data frame solutions are either not distributed (e.g., Pandas in Python) and therefore have limited scalability, or they are not…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-04-11 Ehsan Totoni , Wajih Ul Hassan , Todd A. Anderson , Tatiana Shpeisman

Pre-trained segmentation models are a powerful and flexible tool for segmenting images. Recently, this trend has extended to medical imaging. Yet, often these methods only produce a single prediction for a given image, neglecting inherent…

Computer Vision and Pattern Recognition · Computer Science 2025-03-14 Benjamin Towle , Xin Chen , Ke Zhou

Training Large Language Models (LLMs) is plagued by long training times and massive energy consumption, with modern models requiring months of computation and gigawatt-hours of electricity. In light of these challenges,we introduce…

Machine Learning · Computer Science 2025-10-06 Nii Osae Osae Dade , Moinul Hossain Rahat

Sparse convolutional neural networks (CNNs) have gained significant traction over the past few years as sparse CNNs can drastically decrease the model size and computations, if exploited befittingly, as compared to their dense counterparts.…

Hardware Architecture · Computer Science 2021-11-10 Mahmood Azhar Qureshi , Arslan Munir

FrodoKEM is a lattice-based post-quantum key encapsulation mechanism (KEM). It has been considered for standardization by the International Organization for Standardization (ISO) due to its robust security profile. However, its hardware…

Cryptography and Security · Computer Science 2026-01-26 Kai Li , Jiahao Lu , Fu Yao , Guang Zeng , Dongsheng Liu , Shengfei Gu , Zhengpeng Zhao , Jiachen Wang

We study distributed algorithms implemented in a simplified biologically inspired model for stochastic spiking neural networks. We focus on tradeoffs between computation time and network complexity, along with the role of randomness in…

Neural and Evolutionary Computing · Computer Science 2017-08-22 Nancy Lynch , Cameron Musco , Merav Parter

Function signature recovery is important for many binary analysis tasks such as control-flow integrity enforcement, clone detection, and bug finding. Existing works try to substitute learning-based methods with rule-based methods to reduce…

Cryptography and Security · Computer Science 2022-11-09 Yi Qian , Ligeng Chen , Yuyang Wang , Bing Mao

This paper presents EdgeSAM, an accelerated variant of the Segment Anything Model (SAM), optimized for efficient execution on edge devices with minimal compromise in performance. Our approach involves distilling the original ViT-based SAM…

Computer Vision and Pattern Recognition · Computer Science 2025-09-09 Chong Zhou , Xiangtai Li , Chen Change Loy , Bo Dai