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Related papers: Physical limits to biomechanical sensing

200 papers

The two approaches to analyzing the large strain behavior of rubbery networks are phenomenologically, using strain energy functions drawn from continuum mechanics, and molecular models, which apply statistical mechanics to compute the…

Soft Condensed Matter · Physics 2011-04-11 C. M. Roland

We characterize different cell states, related to cancer and ageing phenotypes, by a measure of entropy of network ensembles, integrating gene expression values and protein interaction networks. The entropy measure estimates the parameter…

Molecular Networks · Quantitative Biology 2013-05-24 G. Menichetti , G. Bianconi , E. Giampieri , G. Castellani , D. Remondini

We study the influence of cell-level mechanical heterogeneity in epithelial tissues using a vertex-based model. Heterogeneity in single cell stiffness is introduced as a quenched random variable in the preferred shape index($p_0$) for each…

Biological Physics · Physics 2019-08-07 Xinzhi Li , Amit Das , Dapeng Bi

As small particles skim our airways during breathing, or our intestines during digestion, the surface epithelium is subjected to local exogenous shear that deforms hundreds to thousands of tightly interacting cells. Unlike shear…

Biological Physics · Physics 2026-01-01 Shahar Nahum , Adi Y. Elkabetz , Matan Elbaz , Liav Daraf , Yael Lavi , Lior Atia

Our understanding of the elasticity and rheology of disordered materials, such as granular piles, foams, emulsions or dense suspensions relies on improving experimental tools to characterize their behaviour at the particle scale. While 2D…

Soft Condensed Matter · Physics 2010-09-24 Mohammad Saadatfar , Adrian P. Sheppard , Tim J. Senden , Alexandre J. Kabla

A fundamental task in developmental biology is to identify the mechanisms which drive morphogenesis. In many cases, pattern formation is driven by the positional information determined by both the gradient of maternal factors and hard-wired…

Molecular Networks · Quantitative Biology 2007-05-23 L. Diambra , Luciano da Fontoura Costa

Based on a non-equilibrium mechanism for spatial pattern formation we study how position information can be controlled by locally coupled discrete dynamical networks, similar to gene regulation networks of cells in a developing…

Molecular Networks · Quantitative Biology 2009-08-26 Thimo Rohlf , Stefan Bornholdt

The stability (or instability) of synchronization is important in a number of real world systems, including the power grid, the human brain and biological cells. For identical synchronization, the synchronizability of a network, which can…

Chaotic Dynamics · Physics 2018-04-17 Jeremie Fish , Jie Sun

In the context of elasticity theory, rigidity theorems allow to derive global properties of a deformation from local ones. This paper presents a new asymptotic version of rigidity, applicable to elastic bodies with sufficiently stiff…

Analysis of PDEs · Mathematics 2019-09-04 Fabian Christowiak , Carolin Kreisbeck

For thin networked materials, which are spatial discrete structures constructed by continuum components, a paradox on the effective thickness defined by the in-plane and out-of-plane stiffnesses is found, i.e. the effective thickness is not…

Applied Physics · Physics 2021-06-30 Fei Pan , Feng Zhang , Yuli Chen , Zhi Liu , Xiaoling Zheng , Bin Liu

The cooperative behavior of neurons and neuronal areas associated with the synchronization behavior proves to be a fundamental neural mechanism. In addition, abnormal levels of synchronization have been related to unhealthy neural…

Biological Physics · Physics 2023-11-16 Bruno R. R. Boaretto

Heterogeneity is a ubiquitous property of many biological systems and has profound implications for computation. While it is conceivable to optimize neuronal and synaptic heterogeneity for a specific task, such top-down optimization is…

Machine Learning · Computer Science 2025-12-02 Arash Golmohammadi , Jannik Luboeinski , Christian Tetzlaff

One of the most unique physical features of cell adhesion to external surfaces is the active generation of mechanical force at the cell-material interface. This includes pulling forces generated by contractile polymer bundles and networks,…

Cell Behavior · Quantitative Biology 2013-09-12 Ulrich S. Schwarz , Samuel S. Safran

Networks of filamentous proteins play a crucial role in cell mechanics. These cytoskeletal networks, together with various crosslinking and other associated proteins largely determine the (visco)elastic response of cells. In this letter we…

Disordered Systems and Neural Networks · Physics 2009-11-10 D. A. Head , A. J. Levine , F. C. MacKintosh

The intense demands for higher data rates and ubiquitous network coverage have raised the stakes on developing new network topology and architecture to meet these ever-increasing demands in a cost-effective manner. The telecommunication…

Networking and Internet Architecture · Computer Science 2018-04-30 Wei Wang , Lin Yang , Qian Zhang , Tao Jiang

Using a minimal model of cells or cohesive cell layers as continuum active elastic media, we examine the effect of substrate thickness and stiffness on traction forces exerted by strongly adhering cells. We obtain a simple expression for…

Soft Condensed Matter · Physics 2015-06-04 Shiladitya Banerjee , M. Cristina Marchetti

Recent studies of animal social networks have significantly increased our understanding of animal behavior, social interactions, and many important ecological and epidemiological processes. However, most of the studies are at low temporal…

Populations and Evolution · Quantitative Biology 2017-02-08 Shi Chen , Amiyaal Ilany , Brad J. White , Michael W. Sanderson , Cristina Lanzas

In vivo and in vitro cells rely on the support of an underlying biocompatible substrate, such as the extracellular matrix or a culture substrate, to spread and proliferate. The mechanical and chemical properties of such structures play a…

Soft Condensed Matter · Physics 2021-11-04 Diogo E. P. Pinto , Margarida M. Telo da Gama , Nuno A. M. Araujo

The problem of distributed control and estimation for multi-agent systems with limited sensing capabilities is a practical challenge motivated by incomplete and imperfect sensing. This article addresses an important case where each agent in…

Systems and Control · Computer Science 2018-03-16 Shiyu Zhao , Daniel Zelazo

Signals recorded from neurons with extracellular planar sensors have a wide range of waveforms and amplitudes. This variety is a result of different physical conditions affecting the ion currents through a cellular membrane. The…