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Graph embedding is a transformation of nodes of a network into a set of vectors. A good embedding should capture the underlying graph topology and structure, node-to-node relationship, and other relevant information about the graph, its…

Social and Information Networks · Computer Science 2021-12-02 Bogumił Kamiński , Łukasz Kraiński , Paweł Prałat , François Théberge

This paper studies structured node classification on graphs, where the predictions should consider dependencies between the node labels. In particular, we focus on solving the problem for partially labeled graphs where it is essential to…

Machine Learning · Computer Science 2023-06-21 Hyosoon Jang , Seonghyun Park , Sangwoo Mo , Sungsoo Ahn

Various approaches and measures from network analysis have been applied to granular and particulate networks to gain insights into their structural, transport, failure-propagation and other systems-level properties. In this article, we…

Soft Condensed Matter · Physics 2019-11-06 Silvia Nauer , Lucas Böttcher , Mason A. Porter

The configuration model is one of the most successful models for generating uncorrelated random networks. We analyze its behavior when the expected degree sequence follows a power law with exponent smaller than two. In this situation, the…

Disordered Systems and Neural Networks · Physics 2009-11-11 M. A. Serrano , M. Boguna

Mining discriminative features for graph data has attracted much attention in recent years due to its important role in constructing graph classifiers, generating graph indices, etc. Most measurement of interestingness of discriminative…

Machine Learning · Computer Science 2013-01-29 Xiangnan Kong , Philip S. Yu , Xue Wang , Ann B. Ragin

Link prediction -- a task of distinguishing actual hidden edges from random unconnected node pairs -- is one of the quintessential tasks in graph machine learning. Despite being widely accepted as a universal benchmark and a downstream task…

Social and Information Networks · Computer Science 2024-05-30 Rachith Aiyappa , Xin Wang , Munjung Kim , Ozgur Can Seckin , Jisung Yoon , Yong-Yeol Ahn , Sadamori Kojaku

The problem of learning the structure of a high dimensional graphical model from data has received considerable attention in recent years. In many applications such as sensor networks and proteomics it is often expensive to obtain samples…

Machine Learning · Statistics 2016-04-08 Gautam Dasarathy , Aarti Singh , Maria-Florina Balcan , Jong Hyuk Park

The study of random graphs and networks had an explosive development in the last couple of decades. Meanwhile, techniques for the statistical analysis of sequences of networks were less developed. In this paper we focus on networks…

Disordered Systems and Neural Networks · Physics 2017-04-18 Daniel Fraiman , Nicolas Fraiman , Ricardo Fraiman

In this paper, we provide a theory of using graph neural networks (GNNs) for multi-node representation learning (where we are interested in learning a representation for a set of more than one node, such as link). We know that GNN is…

Machine Learning · Computer Science 2022-01-19 Muhan Zhang , Pan Li , Yinglong Xia , Kai Wang , Long Jin

Graph self-training is a semi-supervised learning method that iteratively selects a set of unlabeled data to retrain the underlying graph neural network (GNN) model and improve its prediction performance. While selecting highly confident…

Machine Learning · Computer Science 2024-10-15 Fangxin Wang , Kay Liu , Sourav Medya , Philip S. Yu

Prediction of node and graph labels are prominent network science tasks. Data analyzed in these tasks are sometimes related: entities represented by nodes in a higher-level (higher-scale) network can themselves be modeled as networks at a…

Molecular Networks · Quantitative Biology 2021-05-27 Shawn Gu , Meng Jiang , Pietro Hiram Guzzi , Tijana Milenkovic

Recent years have witnessed fast developments of graph neural networks (GNNs) that have benefited myriad graph analytic tasks and applications. Most GNNs rely on the homophily assumption that nodes belonging to the same class are more…

Machine Learning · Computer Science 2026-04-21 Xin Zheng , Yi Wang , Yixin Liu , Ming Li , Miao Zhang , Di Jin , Philip S. Yu , Shirui Pan

Semi-supervised learning on graphs is a widely applicable problem in network science and machine learning. Two standard algorithms -- label propagation and graph neural networks -- both operate by repeatedly passing information along edges,…

Machine Learning · Computer Science 2021-02-02 Junteng Jia , Austin R. Benson

Since their introduction by Kipf and Welling in $2017$, a primary use of graph convolutional networks is transductive node classification, where missing labels are inferred within a single observed graph and its feature matrix. Despite the…

Machine Learning · Statistics 2025-09-09 Nils Detering , Luca Galimberti , Anastasis Kratsios , Giulia Livieri , A. Martina Neuman

Higher-order connectivity patterns such as small induced sub-graphs called graphlets (network motifs) are vital to understand the important components (modules/functional units) governing the configuration and behavior of complex networks.…

Social and Information Networks · Computer Science 2020-09-15 Aldo G. Carranza , Ryan A. Rossi , Anup Rao , Eunyee Koh

Node classification is the task of predicting the labels of unlabeled nodes in a graph. State-of-the-art methods based on graph neural networks achieve excellent performance when all labels are available during training. But in real-life,…

Machine Learning · Computer Science 2023-08-11 Qin Zhang , Zelin Shi , Xiaolin Zhang , Xiaojun Chen , Philippe Fournier-Viger , Shirui Pan

We study random graph models for directed acyclic graphs, an important class of networks that includes citation networks, food webs, and feed-forward neural networks among others. We propose two specific models, roughly analogous to the…

Physics and Society · Physics 2009-10-16 Brian Karrer , M. E. J. Newman

Many popular models from the networks literature can be viewed through a common lens of contingency tables on network dyads, resulting in \emph{log-linear ERGMs}: exponential family models for random graphs whose sufficient statistics are…

Methodology · Statistics 2024-03-05 Elizabeth Gross , Sonja Petrović , Despina Stasi

We introduce a class of random graphs with a community structure, which we call the hierarchical configuration model. On the inter-community level, the graph is a configuration model, and on the intra-community level, every vertex in the…

Probability · Mathematics 2016-12-16 Remco van der Hofstad , Johan S. H. van Leeuwaarden , Clara Stegehuis

Over the past few years, graph neural networks (GNN) and label propagation-based methods have made significant progress in addressing node classification tasks on graphs. However, in addition to their reliance on elaborate architectures and…

Machine Learning · Computer Science 2021-10-18 Yangkun Wang , Jiarui Jin , Weinan Zhang , Yong Yu , Zheng Zhang , David Wipf