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We study the nonlinear dynamics of a completely inhomogeneous DNA chain which is governed by a perturbed sine-Gordon equation. A multiple scale perturbation analysis provides perturbed kink-antikink solitons to represent open state…

Pattern Formation and Solitons · Physics 2008-07-17 M. Daniel , V. Vasumathi

The transfer of electrons and holes along DNA dimers, trimers and polymers is described at the base-pair level, using the relevant on-site energies of the base-pairs and the hopping parameters between successive base-pairs. The temporal and…

Biological Physics · Physics 2014-07-01 Constantinos Simserides

To understand how charge transport is affected by a background medium and vice versa we study a two-channel transport model which captures this interplay via a novel, effective fermion-boson coupling. By means of (dynamical) DMRG we prove…

Strongly Correlated Electrons · Physics 2015-05-30 H. Fehske , S. Ejima , G. Wellein , A. R. Bishop

Computer simulation of the hopping charge transport in disordered organic materials has been carried out explicitly taking into account charge-charge interactions. This approach provides a possibility to take into account dynamic…

Disordered Systems and Neural Networks · Physics 2015-05-13 Sergey V. Novikov

Charge inversion of a DNA double helix by an oppositely charged flexible polyelectrolyte (PE) is widely used for gene delivery. It is considered here in terms of discrete charges of DNA. We concentrate on the worst scenario case when in the…

Soft Condensed Matter · Physics 2009-11-07 T. T. Nguyen , B. I. Shklovskii

The interplay between electronic interactions and disorder is neglected in the conventional Boltzmann theory of transport, yet can play an essential role in determining the resistivity of unconventional metals. When quasiparticles are…

Strongly Correlated Electrons · Physics 2018-01-10 Andrew Lucas , Sean A. Hartnoll

We model the effect of phase-breaking collisions on the coherent electron transport in a disordered one-dimensional single-channel wire. In our model the phase-breaking collisions break the wire into segments, where each segment is an…

Mesoscale and Nanoscale Physics · Physics 2007-05-23 Martin Mosko , Pavel Vagner , Peter Markos , Thomas Schaepers

We study the transport of charge due to polarons in a model of DNA which takes in account its 3D structure and the coupling of the electron wave function with the H--bond distortions and the twist motions of the base pairs. Perturbations of…

Pattern Formation and Solitons · Physics 2018-08-16 J. F. R. Archilla , D. Hennig , J. Agarwal

Attosecond charge migration is a periodic evolution of the charge density of a molecule on a time scale defined by the energy intervals between the electronic states involved. Here, we report the observation of charge migration in neutral…

Strongly interacting electron systems can provide insight into quantum many-body phenomena, such as Mott insulating behavior and spin liquidity, facilitating semiconductor optimization. The Fermi-Hubbard model is the prototypical model used…

Mesoscale and Nanoscale Physics · Physics 2024-02-08 Sumedh Vangara

The transport properties of a conduction junction model characterized by two mutually coupled channels that strongly differ in their couplings to the leads are investigated. Models of this type describe molecular redox junctions (where a…

Mesoscale and Nanoscale Physics · Physics 2015-06-16 Alexander J. White , Agostino Migliore , Michael Galperin , Abraham Nitzan

The decoherence of quantum states defines the transition between the quantum world and classical physics. Decoherence or, analogously, quantum mechanical collapse events pose fundamental questions regarding the interpretation of quantum…

Mesoscale and Nanoscale Physics · Physics 2021-09-24 P. Bredol , H. Boschker , D. Braak , J. Mannhart

We report a scattering matrix theory for dynamic and nonlinear transport in coherent mesoscopic conductors. In general this theory allows predictions of low frequency linear dynamic conductance, as well as weakly nonlinear DC conductance.…

Condensed Matter · Physics 2009-10-30 Zhong-shui Ma , Jian Wang , Hong Guo

Theoretical prediction of phonon transport in modern semiconductor nanodevices requires atomic resolution of device features and quantum transport models covering coherent and incoherent effects. The nonequilibrium Green's function method…

Materials Science · Physics 2016-04-20 K. Miao , S. Sadasivam , J. Charles , G. Klimeck , T. S. Fisher , T. Kubis

We propose a unified diffusion-mobility relation which quantifies both quantum and classical levels of understanding on electron dynamics in ordered and disordered materials. This attempt overcomes the inability of classical Einstein…

Other Condensed Matter · Physics 2017-05-11 K. Navamani , Swapan K. Pati

We study periodic, quasi-periodic (Thue-Morse, Fibonacci, Period Doubling, Rudin-Shapiro), fractal (Cantor, generalized Cantor), Kolakoski and random binary sequences using a tight-binding wire model, where a site is a monomer (e.g., in…

Soft Condensed Matter · Physics 2019-04-11 Konstantinos Lambropoulos , Constantinos Simserides

The interplay of various localizing mechanisms is a central topic of modern condensed matter physics. In this work we experimentally explore the interplay between quasiperiodic disorder and periodic driving, each of which in isolation is…

Atomic Physics · Physics 2025-05-12 Peter Dotti , Yifei Bai , Toshihiko Shimasaki , Anna R. Dardia , David M. Weld

Electronic properties of quasi-two-dimensional molecular conductors $X$[Pd(dmit)$_2$]$_2$ are studied theoretically. We construct an effective model based on the fragment molecular orbital scheme developed recently, which can describe the…

Strongly Correlated Electrons · Physics 2015-03-31 Hitoshi Seo , Takao Tsumuraya , Masahisa Tsuchiizu , Tsuyoshi Miyazaki , Reizo Kato

The study explores perpendicular transport through macroscopically inhomogeneous three-dimensional disordered conductors using mesoscopic methods (real-space Green function technique in a two-probe measuring geometry). The nanoscale samples…

Mesoscale and Nanoscale Physics · Physics 2009-11-07 Branislav K. Nikolic

This dissertation presents an investigation into the electrical properties of two types of G4-DNA and several DNA-based molecules, targeting them as candidates for molecular wires and devices. Atomic force microscopy (AFM) and electrostatic…

Mesoscale and Nanoscale Physics · Physics 2015-12-08 Gideon I. Livshits