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We consider the problem of how to assign treatment in a randomized experiment, in which the correlation among the outcomes is informed by a network available pre-intervention. Working within the potential outcome causal framework, we…

Methodology · Statistics 2017-05-19 Guillaume W. Basse , Edoardo M. Airoldi

Hierarchically structured materials, which possess distinct features on different length scales, are ubiquitous in nature and engineering. In many cases, one structural level may be ordered while another structural level may be disordered.…

Soft Condensed Matter · Physics 2019-09-11 Jonathan Michel , Peter J. Yunker

Several physical mechanisms have been proposed to explain allostery in proteins. They differ by the number of internal states that they assume a protein to occupy, leaving open the question of what controls the emergence of these distinct…

Biomolecules · Quantitative Biology 2021-11-19 Eric Rouviere , Rama Ranganathan , Olivier Rivoire

The engineered control of cellular function through the design of synthetic genetic networks is becoming plausible. Here we show how a naturally occurring network can be used as a parts list for artificial network design, and how model…

Biological Physics · Physics 2009-11-07 Jeff Hasty , Farren Isaacs , Milos Dolnik , David McMillen , J. J. Collins

Allostery commonly refers to the mechanism that regulates protein activity through the binding of a molecule at a different, usually distal, site from the orthosteric site. The omnipresence of allosteric regulation in nature and its…

Biomolecules · Quantitative Biology 2022-07-18 Nan Wu , Sophia N. Yaliraki , Mauricio Barahona

Filamentous bio-materials such as fibrin or collagen networks exhibit an enormous stiffening of their elastic moduli upon large deformations. This pronounced nonlinear behavior stems from a significant separation between the stiffnesses…

Soft Condensed Matter · Physics 2019-05-21 Robbie Rens , Carlos Villarroel , Gustavo Düring , Edan Lerner

Predicting how the brain can be driven to specific states by means of internal or external control requires a fundamental understanding of the relationship between neural connectivity and activity. Network control theory is a powerful tool…

Neurons and Cognition · Quantitative Biology 2019-08-12 Teresa M. Karrer , Jason Z. Kim , Jennifer Stiso , Ari E. Kahn , Fabio Pasqualetti , Ute Habel , Danielle S. Bassett

Polymer chains decorated with a fraction of monomers capable of forming reversible bonds form transient polymer networks that are important in soft and biological systems. If chains are flexible and the attractive monomers are all of the…

Soft Condensed Matter · Physics 2023-10-18 Lorenzo Rovigatti , Francesco Sciortino

Deploying neural networks to different devices or platforms is in general challenging, especially when the model size is large or model complexity is high. Although there exist ways for model pruning or distillation, it is typically…

Machine Learning · Computer Science 2023-12-07 Kai Li , Yi Luo

Networks are widely used in science and technology to represent relationships between entities, such as social or ecological links between organisms, enzymatic interactions in metabolic systems, or computer infrastructure. Statistical…

Discrete Mathematics · Computer Science 2012-07-19 Alexander Gutfraind , Lauren Ancel Meyers , Ilya Safro

Elastic network models, simple structure-based representations of biomolecules where atoms interact via short-range harmonic potentials, provide great insight into a molecule's internal dynamics and mechanical properties at extremely low…

Soft Condensed Matter · Physics 2018-12-12 Patrick Diggins , Changjiang Liu , Markus Deserno , Raffaello Potestio

The mechanics of disordered fibrous networks such as those that make up the extracellular matrix are strongly dependent on the local connectivity or coordination number. For biopolymer networks this coordination number is typically between…

Soft Condensed Matter · Physics 2019-05-01 Sadjad Arzash , Jordan L. Shivers , Albert J. Licup , Abhinav Sharma , Fred C. MacKintosh

Systems of dynamical interactions between competing species can be used to model many complex systems, and can be mathematically described by {\em random} networks. Understanding how patterns of activity arise in such systems is important…

Adaptation and Self-Organizing Systems · Physics 2016-01-21 Nick McCullen , Thomas Wagenknecht

We develop an algorithm capable of compressing large networks into a smaller ones with similar control plane behavior: For every stable routing solution in the large, original network, there exists a corresponding solution in the compressed…

Networking and Internet Architecture · Computer Science 2018-06-25 Ryan Beckett , Aarti Gupta , Ratul Mahajan , David Walker

High speed machining has been improved thanks to considerable advancement on the tools (optimum geometry, harder materials), on machined materials (increased workability and machining capacity for harder workpieces) and finally on the…

Classical Physics · Physics 2009-09-29 Olivier Cahuc , Alain Gérard

We present a novel method to reconstruct complex network from partial information. We assume to know the links only for a subset of the nodes and to know some non-topological quantity (fitness) characterising every node. The missing links…

Physics and Society · Physics 2015-06-11 Nicoló Musmeci , Stefano Battiston , Guido Caldarelli , Michelangelo Puliga , Andrea Gabrielli

Mechanical metamaterials are renowned for their ability to achieve high stiffness and strength at low densities, often at the expense of low ductility and stretchability-a persistent trade-off in materials. In contrast, materials such as…

Soft Condensed Matter · Physics 2026-04-21 James Utama Surjadi , Bastien F. G. Aymon , Molly Carton , Carlos M. Portela

Networks are pervasive in the real world. Nature, society, economy, and technology are supported by ostensibly different networks that in fact share an amazing number of interesting structural properties. Network thinking exploded in the…

Logic in Computer Science · Computer Science 2010-03-19 Massimo Franceschet

The structural complexity of soft gels is at the origin of a versatile mechanical response that allows for large deformations, controlled elastic recovery and toughness in the same material. A limit to exploiting the potential of such…

Soft Condensed Matter · Physics 2017-10-06 Mehdi Bouzid , Emanuela Del Gado

The microstructure of material strongly influences its mechanical properties and the microstructure itself is influenced by the processing conditions. Thus, establishing a Process-Structure-Property relationship is a crucial task in…

Materials Science · Physics 2021-07-21 Mohammad Safiuddin , CH Likith Reddy , Ganesh Vasantada , CHJNS Harsha , Srinu Gangolu