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Calcium (Ca2+) signalling is one of the most important mechanisms of information propagation in the body. In embryogenesis the interplay between Ca2+ signalling and mechanical forces is critical to the healthy development of an embryo but…

Quantitative Methods · Quantitative Biology 2019-01-23 Katerina Kaouri , Philip K. Maini , Paris Skourides , Neophytos Christodoulou , S. Jonathan Chapman

Mitochondrial adenine nucleotide (AdN) content is regulated through the Ca2+-activated, electroneutral ATP-Mg/Pi carrier (APC). The APC is a protein in the mitochondrial carrier super family that localizes to the inner mitochondrial…

Cell Behavior · Quantitative Biology 2013-04-10 Shivendra G. Tewari , Ranjan K. Dash , Daniel A. Beard , Jason N. Bazil

In pancreatic $\beta$-cells, calcium oscillation signal is the core part of glucose-stimulated insulin secretion. Intracellular calcium concentration oscillates in response to the intake of glucose, which triggers the exocytosis of insulin…

Cell Behavior · Quantitative Biology 2018-11-30 Yunsheng Sun , Congjian Ni , Yingda Ge , Hong Qian , Qi Ouyang , Fangting Li

Neuronal calcium (Ca2+) signaling represents a molecular trigger for diverse central nervous system adaptations and maladaptions. The altered function of dorsal spinal inhibitory interneurons is strongly implicated in the mechanisms…

Neurons and Cognition · Quantitative Biology 2019-02-19 Anna M. Hagenston , Sara Ben Ayed , Hilmar Bading

Hyperamylinemia, a condition characterized by above-normal blood levels of the pancreas-derived peptide amylin, accompanies obesity and precedes type II diabetes. Human amylin oligomerizes easily and can deposit in the pancreas, brain, and…

Molecular Networks · Quantitative Biology 2018-03-16 Bradley D. Stewart , Caitlin E. Scott , Thomas P. McCoy , Guo Yin , Florin Despa , Sanda Despa , Peter M. Kekenes-Huskey

Many cells use calcium signalling to carry information from the extracellular side of the plasma membrane to targets in their interior. Since virtually all cells employ a network of biochemical reactions for Ca2+ signalling, much effort has…

Neurons and Cognition · Quantitative Biology 2009-12-17 Maurizio De Pitta` , Vladislav Volman , Herbert Levine , Eshel Ben-Jacob

Mitochondria are critical organelles in eukaryotes that produce the energy currency ATP. In nerve axons, mitochondria are known to align at almost regular intervals to maintain a constant ATP concentration, but little is known about the…

Biological Physics · Physics 2023-05-10 Masashi K. Kajita , Yoshiyuki Konishi , Tetsuhiro S. Hatakeyama

Type 2 diabetes (T2D) is a challenging metabolic disorder characterized by a substantial loss of $\beta$-cell mass and alteration of $\beta$-cell function in the islets of Langerhans, disrupting insulin secretion and glucose homeostasis.…

Biological Physics · Physics 2021-05-04 Maryam Saadati , Yousef Jamali

Isolated sarcoplasmic reticulum vesicles in the presence of Mg(2+) and absence of Ca(2+) retain significant ATP hydrolytic activity that can be attributed to the Ca(2+)-ATPase protein. At neutral pH and the presence of 5 mM Mg(2+), the…

Molecular Networks · Quantitative Biology 2024-02-01 A Lax , F Soler , F Fernandez Belda

The ATP-driven Plasma Membrane Calcium pump or Ca(2+)-ATPase (PMCA) is characterized by a high affinity to calcium and a low transport rate compared to other transmembrane calcium transport proteins. It plays a crucial role for calcium…

Biological Physics · Physics 2014-11-18 Michael Graupner , Frido Erler , Michael Meyer-Hermann

Living organisms continuously harness energy to perform complex functions for their adaptation and survival while part of that energy is dissipated in the form of heat or chemical waste. Determining the energetic cost and the efficiency of…

Molecular Networks · Quantitative Biology 2023-08-07 Valérie Voorsluijs , Francesco Avanzini , Gianmaria Falasco , Massimiliano Esposito , Alexander Skupin

The calcium (Ca$^{2+}$) signalling system is important for many cellular processes within the human body. Signals are transmitted within the cell by releasing Ca$^{2+}$ from the endoplasmic reticulum (ER) into the cytosol via clusters of…

Quantitative Methods · Quantitative Biology 2024-02-01 Molly Hawker , Pengxing Cao , James Sneyd , Ivo Siekmann

As the places where most of the fuel of the cell, namely ATP, is synthesized, mitochondria are crucial organelles in eukaryotic cells. The shape of the invaginations of the mitochondria inner membrane, known as cristae, has been identified…

Cell-to-cell heterogeneity drives a range of (patho)physiologically important phenomena, such as cell fate and chemotherapeutic resistance. The role of metabolism, and particularly mitochondria, is increasingly being recognised as an…

Subcellular Processes · Quantitative Biology 2019-02-11 Juvid Aryaman , Iain G. Johnston , Nick S. Jones

To sustain metabolism, intracellular ATP concentration must be regulated within an appropriate range. This coordination is achieved through the function of the AMP-activated protein kinase (AMPK), a cellular "fuel gauge" that is expressed…

Tissues and Organs · Quantitative Biology 2019-11-07 Benoit Viollet

Understanding how the collective physical processes drive robust morphological transitions in animal development requires the characterization of the relevant fields underlying morphogenesis. Calcium (Ca2+) is known to be such a field. Here…

Biological Physics · Physics 2023-04-26 Oded Agam , Erez Braun

Studies by microbiologists from the 1970s provided robust estimates for the energy supply and demand of a prokaryotic cell. The amount of ATP needed to support growth was calculated from the chemical composition of the cell and known…

Molecular Networks · Quantitative Biology 2025-03-24 William F. Martin

Living cells sense noisy biochemical signals crucial for survival, yet models incorporating intracellular signaling are limited. This study examines how cells sense chemotactic concentrations through phosphorylation readouts in Ca2+…

Subcellular Processes · Quantitative Biology 2025-08-22 Swoyam Srirupa , Pradeep , Vaibhav Wasnik

Ca$^{2+}$ plays an important role in cell signal transduction. Its intracellular propagation is the most basic process of Ca$^{2+}$ signaling, such as calcium wave and double messenger system. In this work, with both numerical simulation…

Biological Physics · Physics 2021-02-01 Han-Yu Jiang , Jun He

Hydrogenase occupy a central place in the energy metabolism of anaerobic bacteria. Although the structure of mitochondrial complex I is similar to that of hydrogenase, whether it has hydrogen metabolic activity remain unclear. Here, we show…

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