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The adaptive immune system responds to foreign invaders by activating T cells. However, this response is perilous if T cells are activated by the wrong signal or if they remain activated unduly long after the threat has been eliminated. It…

Populations and Evolution · Quantitative Biology 2017-12-04 Gershom Buri , Girma Mesfin Zelleke , Wilfred Ndifon

Artificial immune systems, more specifically the negative selection algorithm, have previously been applied to intrusion detection. The aim of this research is to develop an intrusion detection system based on a novel concept in immunology,…

Artificial Intelligence · Computer Science 2016-11-17 Julie Greensmith , Jamie Twycross , Uwe Aickelin

Dendritic cells are antigen presenting cells that provide a vital link between the innate and adaptive immune system. Research into this family of cells has revealed that they perform the role of coordinating T-cell based immune responses,…

Artificial Intelligence · Computer Science 2010-07-05 Julie Greensmith , Uwe Aickelin , Steve Cayzer

Following antigen stimulation, the net outcomes of a T cell response are shaped by integrated signals from both positive co-stimulatory and negative regulatory molecules. Recently, the blockade of negative regulatory molecules (i.e. immune…

Cell Behavior · Quantitative Biology 2017-09-19 Haidong Dong , Yiyi Yan , Roxana S. Dronca , Svetomir N. Markovic

The Dendritic Cell Algorithm (DCA) as one of the emerging evolutionary algorithms is based on the behavior of the specific immune agents; known as Dendritic Cells (DCs). DCA has several potentially beneficial features for binary…

Cryptography and Security · Computer Science 2020-04-22 Ehsan Farzadnia , Hossein Shirazi , Alireza Nowroozi

Cytotoxic T lymphocytes eliminate infected or malignant cells, safeguarding surrounding tissues. Although experimental and systems-immunology studies have cataloged many molecular and cellular actors involved in an immune response, the…

Biological Physics · Physics 2026-03-04 Obinna A. Ukogu , Zachary Montague , Grégoire Altan-Bonnet , Armita Nourmohammad

Cell signaling networks are complex and often incompletely characterized, making it difficult to obtain a comprehensive picture of the mechanisms they encode. Mathematical modeling of these networks provides important clues, but the models…

Molecular Networks · Quantitative Biology 2022-11-07 Soutick Saha , Hye-ran Moon , Bumsoo Han , Andrew Mugler

The innate immune system, acting as the first line of host defense, senses and adapts to foreign challenges through complex intracellular and intercellular signaling networks. Endotoxin tolerance and priming elicited by macrophages are…

Molecular Networks · Quantitative Biology 2017-08-23 Yan Fu , Trevor Glaros , Meng Zhu , Ping Wang , Zhanghan Wu , John J Tyson , Liwu Li , Jianhua Xing

Viral infections trigger complex immune responses with heterogeneous outcomes shaped by nonlinear feedbacks. An ordinary differential equation model is developed to investigate immune response dynamics during viral infection, incorporating…

Quantitative Methods · Quantitative Biology 2025-10-08 Xiaoxin Wang , Kai Kang , Leyi Zhang , Changjing Zhuge

Dendritic cells are antigen presenting cells that provide a vital link between the innate and adaptive immune system, providing the initial detection of pathogenic invaders. Research into this family of cells has revealed that they perform…

Artificial Intelligence · Computer Science 2010-07-05 Julie Greensmith , Uwe Aickelin , Gianni Tedesco

Immune system is the most important defense system to resist human pathogens. In this paper we present an immune model with bipartite graphs theory. We collect data through COPE database and construct an immune cell- mediators network. The…

Adaptation and Self-Organizing Systems · Physics 2007-12-06 Sheng-Rong Zou , Yu-Jing Peng , Zhong-Wei Guo , Ta Zhou , Chang-gui Gu , Da-Ren He

The clonal expansion of T cells during an infection is tightly regulated to ensure an appropriate immune response against invading pathogens. Although experiments have mapped the trajectory from expansion to contraction, the interplay…

Dynamical Systems · Mathematics 2021-10-08 Pantea Pooladvand , Peter S. Kim , Barbara Fazekas de St Groth

A major contribution to the onset and development of autoimmune disease is known to come from infections. An important practical problem is identifying the precise mechanism by which the breakdown of immune tolerance as a result of immune…

Quantitative Methods · Quantitative Biology 2018-05-21 F. Fatehi Chenar , Y. N. Kyrychko , K. B. Blyuss

Dendritic cells are the crime scene investigators of the human immune system. Their function is to correlate potentially anomalous invading entities with observed damage to the body. The detection of such invaders by dendritic cells results…

Artificial Intelligence · Computer Science 2010-07-05 Julie Greensmith , Uwe Aickelin

Migration of cells can be characterized by two, prototypical types of motion: individual and collective migration. We propose a statistical-inference approach designed to detect the presence of cell-cell interactions that give rise to…

Cell Behavior · Quantitative Biology 2020-03-13 Elena Agliari , Pablo J. Sáez , Adriano Barra , Matthieu Piel , Pablo Vargas , Michele Castellana

Recent studies have reported that T cells can integrate signals between interrupted encounters with Antigen Presenting Cells (APCs) in such a way that the process of signal integration exhibits a form of memory. Here, we carry out a…

Molecular Networks · Quantitative Biology 2007-07-18 Jason W. Locasale

We formulate the dynamical model for the anti-tumor immune response based on intercellular cytokine-mediated interactions with the interleukin-2 (IL-2) taken into account. The analysis shows that the expression level of tumor antigens on…

Cell Behavior · Quantitative Biology 2008-07-26 O. G. Isaeva , V. A. Osipov

Clinical studies have indicated that in malignant surveillances fluctuations in the population of certain effector T-cell repertoire become suppressed. Motivated by such observations and in an attempt to quantify adaptive human response to…

Molecular Networks · Quantitative Biology 2015-05-19 Susmita Roy , Biman Bagchi

Uncontrolled, excessive production of pro-inflammatory mediators from immune cells and traumatized tissues can cause systemic inflammatory issues like sepsis, one of the ten leading causes of death in the United States and one of the three…

Tissues and Organs · Quantitative Biology 2019-08-22 Atanaska Dobreva , Renee Brady , Kamila Larripa , Charles Puelz , Jesper Mehlsen , Mette S. Olufsen

The initial reaction of the body to pathogenic microbial infection or severe tissue trauma is an acute inflammatory response. The magnitude of such a response is of critical importance, since an uncontrolled response can cause further…

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