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Convergent Cross Mapping (CCM) is a powerful method for detecting causality in coupled nonlinear dynamical systems, providing a model-free approach to capture dynamic causal interactions. Partial Cross Mapping (PCM) was introduced as an…

Machine Learning · Computer Science 2025-02-07 Elise Zhang , François Mirallès , Raphaël Rousseau-Rizzi , Arnaud Zinflou , Di Wu , Benoit Boulet

The field of hypothesis generation promises to reduce costs in neuroscience by narrowing the range of interventional studies needed to study various phenomena. Existing machine learning methods can generate scientific hypotheses from…

Machine Learning · Computer Science 2025-07-04 Zachary C. Brown , David Carlson

The specific connectivity of a neuronal network is reflected in the dynamics of the signals recorded on its nodes. The analysis of how the activity in one node predicts the behaviour of another gives the directionality in their…

Quantitative Methods · Quantitative Biology 2019-11-21 Víctor J. López-Madrona , Fernanda Matias , Claudio Mirasso , Santiago Canals , Ernesto Pereda

A measure to estimate the direct and directional coupling in multivariate time series is proposed. The measure is an extension of a recently published measure of conditional Mutual Information from Mixed Embedding (MIME) for bivariate time…

Data Analysis, Statistics and Probability · Physics 2015-06-16 Dimitris Kugiumtzis

Causal discovery is a difficult problem that typically relies on strong assumptions on the data-generating model, such as non-Gaussianity. In practice, many modern applications provide multiple related views of the same system, which has…

Machine Learning · Computer Science 2025-09-29 Ambroise Heurtebise , Omar Chehab , Pierre Ablin , Alexandre Gramfort , Aapo Hyvärinen

Causal inference concerns the identification of cause-effect relationships between variables. However, often only linear combinations of variables constitute meaningful causal variables. For example, recovering the signal of a cortical…

We present a didactic introduction to spectral Dynamic Causal Modelling (DCM), a Bayesian state-space modelling approach used to infer effective connectivity from non-invasive neuroimaging data. Spectral DCM is currently the most widely…

Neurons and Cognition · Quantitative Biology 2023-09-07 Leonardo Novelli , Karl Friston , Adeel Razi

Electroencephalography (EEG) is a useful way to implicitly monitor the users perceptual state during multimedia consumption. One of the primary challenges for the practical use of EEG-based monitoring is to achieve a satisfactory level of…

Machine Learning · Computer Science 2021-12-07 Soobeom Jang , Seong-Eun Moon , Jong-Seok Lee

Temporal graphs are structures which model relational data between entities that change over time. Due to the complex structure of data, mining statistically significant temporal subgraphs, also known as temporal motifs, is a challenging…

Social and Information Networks · Computer Science 2021-10-05 Antonio Longa , Giulia Cencetti , Bruno Lepri , Andrea Passerini

Understanding the nature of the changes exhibited by evolving neuronal dynamics from high-dimensional activity data is essential for advancing neuroscience, particularly in the study of neuronal network development and the pathophysiology…

Neurons and Cognition · Quantitative Biology 2025-03-03 Ho Fai Po , Akke Mats Houben , Anna-Christina Haeb , Yordan P. Raykov , Daniel Tornero , Jordi Soriano , David Saad

A challenging problem when studying a dynamical system is to find the interdependencies among its individual components. Several algorithms have been proposed to detect directed dynamical influences between time series. Two of the most used…

Data Analysis, Statistics and Probability · Physics 2015-09-09 Alessandro Montalto , Sebastiano Stramaglia , Luca Faes , Giovanni Tessitore , Roberto Prevete , Daniele Marinazzo

The bulk of the research effort on brain connectivity revolves around statistical associations among brain regions, which do not directly relate to the causal mechanisms governing brain dynamics. Here we propose the multiscale causal…

Machine Learning · Computer Science 2024-03-21 Gabriele D'Acunto , Francesco Bonchi , Gianmarco De Francisci Morales , Giovanni Petri

Coherence and phase synchronization between time series corresponding to different spatial locations are usually interpreted as indicators of the connectivity between locations. In neurophysiology, time series of electric neuronal activity…

Methodology · Statistics 2007-07-12 Roberto D. Pascual-Marqui

Non-invasive brainwave decoding is usually done using Magneto/Electroencephalography (MEG/EEG) sensor measurements as inputs. This makes combining datasets and building models with inductive biases difficult as most datasets use different…

Signal Processing · Electrical Eng. & Systems 2024-10-29 Yonatan Gideoni , Ryan Charles Timms , Oiwi Parker Jones

Causal terminology is often introduced in the interpretation of encoding and decoding models trained on neuroimaging data. In this article, we investigate which causal statements are warranted and which ones are not supported by empirical…

We present a generalized linear structural causal model, coupled with a novel data-adaptive linear regularization, to recover causal directed acyclic graphs (DAGs) from time series. By leveraging a recently developed stochastic monotone…

Machine Learning · Computer Science 2023-01-31 Song Wei , Yao Xie , Christopher S. Josef , Rishikesan Kamaleswaran

We present a generalized linear structural causal model, coupled with a novel data-adaptive linear regularization, to recover causal directed acyclic graphs (DAGs) from time series. By leveraging a recently developed stochastic monotone…

Machine Learning · Computer Science 2023-09-27 Song Wei , Yao Xie , Christopher S. Josef , Rishikesan Kamaleswaran

Event-based sensors offer high temporal resolution and low latency by generating sparse, asynchronous data. However, converting this irregular data into dense tensors for use in standard neural networks diminishes these inherent advantages,…

Computer Vision and Pattern Recognition · Computer Science 2025-07-22 Aayush Atul Verma , Arpitsinh Vaghela , Bharatesh Chakravarthi , Kaustav Chanda , Yezhou Yang

Modeling complex spatiotemporal dependencies in correlated traffic series is essential for traffic prediction. While recent works have shown improved prediction performance by using neural networks to extract spatiotemporal correlations,…

Machine Learning · Computer Science 2023-09-08 Junpeng Lin , Ziyue Li , Zhishuai Li , Lei Bai , Rui Zhao , Chen Zhang

In the wake of recent advances in experimental methods in neuroscience, the ability to record in-vivo neuronal activity from awake animals has become feasible. The availability of such rich and detailed physiological measurements calls for…

Quantitative Methods · Quantitative Biology 2016-11-03 Gal Mishne , Ronen Talmon , Ron Meir , Jackie Schiller , Uri Dubin , Ronald R. Coifman