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We implement a total-energy minimization scheme to allow for relaxation of atomic positions in density functional calculations for two-dimensional (2D) systems using a mixed basis set. The basis functions consist of products of 2D plane…

Materials Science · Physics 2022-03-14 Chung-Yuan Ren , Yia-Chung Chang

As machine learning is increasingly used to help make decisions, there is a demand for these decisions to be explainable. Arguably, the most explainable machine learning models use decision rules. This paper focuses on decision sets, a type…

Artificial Intelligence · Computer Science 2020-07-31 Jinqiang Yu , Alexey Ignatiev , Peter J. Stuckey , Pierre Le Bodic

We study self-similarity in one-dimensional probabilistic cellular automata (PCA) using the renormalization technique. We introduce a general framework for algebraic construction of renormalization groups (RG) on cellular automata and apply…

Statistical Mechanics · Physics 2011-08-22 Erik Edlund , Martin Nilsson Jacobi

An overview of the Conquest linear scaling density functional theory (DFT) code is given, focussing particularly on the scaling behaviour on modern high- performance computing (HPC) platforms. We demonstrate that essentially perfect linear…

Materials Science · Physics 2010-02-03 D. R. Bowler , T. Miyazaki

In this paper, we investigate the halting problem for deterministic cellula automata in the pentagrid. We prove that the problem is decidable when the cellular automaton starts its computation from a finite configuration and when it has at…

Formal Languages and Automata Theory · Computer Science 2018-12-11 Maurice Margenstern

This chapter presents controlled approximations of Kohn-Sham density functional theory (DFT) that enable very large scale simulations. The work is motivated by the study of defects in crystalline solids, though the ideas can be used in…

Materials Science · Physics 2021-12-14 Kaushik Bhattacharya , Vikram Gavini , Michael Ortiz , Mauricio Ponga , Phanish Suryanarayana

Sequence theories are an extension of theories of strings with an infinite alphabet of letters, together with a corresponding alphabet theory (e.g. linear integer arithmetic). Sequences are natural abstractions of extendable arrays, which…

Logic in Computer Science · Computer Science 2023-08-02 Artur Jeż , Anthony W. Lin , Oliver Markgraf , Philipp Rümmer

The Dendritic Cell Algorithm (DCA) is inspired by the function of the dendritic cells of the human immune system. In nature, dendritic cells are the intrusion detection agents of the human body, policing the tissue and organs for potential…

Artificial Intelligence · Computer Science 2010-07-05 Julie Greensmith , Uwe Aickelin , Steve Cayzer

We report a new multicanonical Monte Carlo algorithm to obtain the density of states for physical systems with continuous state variables in statistical mechanics. Our algorithm is able to obtain a closed-form expression for the density of…

Computational Physics · Physics 2018-11-20 Alfred C. K. Farris , Ying Wai Li , Markus Eisenbach

We report a new multicanonical Monte Carlo (MC) algorithm to obtain the density of states (DOS) for physical systems with continuous state variables in statistical mechanics. Our algorithm is able to obtain an analytical form for the DOS…

Computational Physics · Physics 2017-07-25 Ying Wai Li , Markus Eisenbach

When does a deterministic computational model define a probability distribution? What are its properties? This work formalises and settles this stochasticity problem for weighted automata, and its generalisation cost register automata…

Formal Languages and Automata Theory · Computer Science 2025-10-23 Smayan Agarwal , Aalok Thakkar

In nonadaptive combinatorial group testing (CGT), it is desirable to identify a small set of up to $d$ defectives from a large population of $n$ items with as few tests (i.e. large rate) and efficient identifying algorithm as possible. In…

Combinatorics · Mathematics 2020-10-08 Jinping Fan , Hung-Lin Fu , Yujie Gu , Ying Miao , Maiko Shigeno

Determinant codes are a class of exact-repair regenerating codes for distributed storage systems with parameters (n, k = d, d). These codes cover the entire trade-off between per-node storage and repair-bandwidth. In an earlier work of the…

Information Theory · Computer Science 2021-01-18 Mehran Elyasi , Soheil Mohajer

The work is concerned with the trade-offs between the dimension and the time and space complexity of computations on nondeterministic cellular automata. It is proved, that 1). Every NCA $\Cal A$ of dimension $r$, computing a predicate $P$…

comp-gas · Physics 2007-05-23 Yuri Ozhigov

In this paper, we analyze the algebraic structure of some null boundary as well as some periodic boundary 2-D Cellular Automata (CA) rules by introducing a new matrix multiplication operation using only AND, OR instead of most commonly used…

Discrete Mathematics · Computer Science 2008-08-12 Sudhakar Sahoo , Sanjaya Sahoo , Birendra Kumar Nayak , Pabitra Pal Choudhury

Biological systems exhibit remarkable morphogenetic plasticity, where a single genome can encode various specialized cellular structures triggered by local chemical signals. In the domain of Deep Learning, Differentiable Neural Cellular…

Neural and Evolutionary Computing · Computer Science 2025-12-10 Ali Sakour

Cellular automata have long been celebrated for their ability to generate complex behaviors from simple, local rules, with well-known discrete models like Conway's Game of Life proven capable of universal computation. Recent advancements…

Machine Learning · Computer Science 2025-05-22 Gabriel Béna , Maxence Faldor , Dan F. M. Goodman , Antoine Cully

Cellular automata (CA) have been utilized for decades as discrete models of many physical, mathematical, chemical, biological, and computing systems. The most widely known form of CA, the elementary cellular automaton (ECA), has been…

Cellular Automata and Lattice Gases · Physics 2013-10-15 Lucas Kang

Existing methods provide varying algorithms for different types of Boolean satisfiability problems (SAT), lacking a general solution framework. Accordingly, this study proposes a unified framework DCSAT based on integer programming and…

Artificial Intelligence · Computer Science 2023-12-29 Anqi Li , Congying Han , Tiande Guo , Haoran Li , Bonan Li

Among the local consistency techniques used for solving constraint networks, path-consistency (PC) has received a great deal of attention. However, enforcing PC is computationally expensive and sometimes even unnecessary. Directional…

Artificial Intelligence · Computer Science 2018-04-24 Shufeng Kong , Sanjiang Li , Michael Sioutis