Related papers: Topological Data Analysis with Bregman Divergences
A topos theoretic generalisation of the category of sets allows for modelling spaces which vary according to time intervals. Persistent homology, or more generally, persistence is a central tool in topological data analysis, which examines…
We provide a short introduction to the field of topological data analysis and discuss its possible relevance for the study of complex systems. Topological data analysis provides a set of tools to characterise the shape of data, in terms of…
The purpose of this paper is twofold. On a technical side, we propose an extension of the Hausdorff distance from metric spaces to spaces equipped with asymmetric distance measures. Specifically, we focus on the family of Bregman…
The computational cost of persistent homology is often dominated by the growth of the underlying simplicial filtrations. Many different filtrations exist, each with its own assumptions and trade-offs, but all face some form of this growth…
Persistent homology is an important methodology in topological data analysis which adapts theory from algebraic topology to data settings. Computing persistent homology produces persistence diagrams, which have been successfully used in…
Through the use of examples, we explain one way in which applied topology has evolved since the birth of persistent homology in the early 2000s. The first applications of topology to data emphasized the global shape of a dataset, such as…
Dynamic Bayesian networks (DBNs) are a widely used framework for modeling systems whose probabilistic structure evolves over time. Standard inference methods focus on local conditional distributions and can miss larger-scale patterns in how…
The increasing availability of multiple network data has highlighted the need for statistical models for heterogeneous populations of networks. A convenient framework makes use of metrics to measure similarity between networks. In this…
We give an $O(n^2(k+\log n))$ algorithm for computing the $k$-dimensional persistent homology of a filtration of clique complexes of cyclic graphs on $n$ vertices. This is nearly quadratic in the number of vertices $n$, and therefore a…
The motivation of this paper is to recognize a geometric shape from a noisy sample in the form of a point cloud. Inspired by the HDBSCAN clustering algorithm, we introduce the core dissimilarity, from which we construct the core…
Interacting, self-propelled particles such as epithelial cells can dynamically self-organize into complex multicellular patterns, which are challenging to classify without a priori information. Classically, different phases and phase…
A central problem in data-driven scientific inquiry is how to interpret structure in noisy, high-dimensional data. Topological data analysis (TDA) provides a solution via persistent homology, which encodes features of interest as…
We study the connection between discrete Morse theory and persistent homology in the context of shape reconstruction methods. Specifically, we consider the construction of Wrap complexes, introduced by Edelsbrunner as a subcomplex of the…
We characterize structures such as monotonicity, convexity, and modality in smooth regression curves using persistent homology. Persistent homology is a key tool in topological data analysis that detects higher-dimensional topological…
Persistent homology is constrained to purely topological persistence while multiscale graphs account only for geometric information. This work introduces persistent spectral theory to create a unified low-dimensional multiscale paradigm for…
This paper presents a new clustering algorithm for space-time data based on the concepts of topological data analysis and in particular, persistent homology. Employing persistent homology - a flexible mathematical tool from algebraic…
In this paper, we establish a coupling lemma for standard families in the setting of piecewise expanding interval maps with countably many branches. Our method merely requires that the expanding map satisfies Chernov's one-step expansion at…
We inspect Vietoris-Rips complexes $VR_t(X)$ of certain metric spaces $X$ using a new generalization of Bestvina-Brady discrete Morse theory. Our main result is a pair of metric criteria on $X$, called the Morse Criterion and Link…
Similarity metrics are central in the theory of large networks and graph limits. For bounded-degree graphs, the Benjamini--Schramm metric records the distribution of rooted neighbourhoods, while the stronger colored-neighbourhood metric…
We call a continuous self-map that reveals itself through a discrete set of point-value pairs a sampled dynamical system. Capturing the available information with chain maps on Delaunay complexes, we use persistent homology to quantify the…