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Substructure search in chemical compound databases is a fundamental task in cheminformatics with critical implications for fields such as drug discovery, materials science, and toxicology. However, the increasing size and complexity of…

Databases · Computer Science 2023-10-04 Vsevolod Vaskin , Dmitri Jakovlev , Fedor Bakharev

Keyword search in relational databases has been widely studied in recent years because it does not require users neither to master a certain structured query language nor to know the complex underlying database schemas. Most of existing…

Databases · Computer Science 2011-08-24 Yanwei XU

In this uncertain world, data uncertainty is inherent in many applications and its importance is growing drastically due to the rapid development of modern technologies. Nowadays, researchers have paid more attention to mine patterns in…

Classification of proteins based on their structure provides a valuable resource for studying protein structure, function and evolutionary relationships. With the rapidly increasing number of known protein structures, manual and…

Computational Engineering, Finance, and Science · Computer Science 2009-07-14 Oktie Hassanzadeh

During the past decades significant efforts have been made to propose data structures for answering connectivity queries on fully dynamic graphs, i.e., graphs with frequent insertions and deletions of edges. However, a comprehensive…

Databases · Computer Science 2025-01-13 Qing Chen , Michael H. Böhlen , Sven Helmer

In view of the paradigm shift that makes science ever more data-driven, we consider deterministic scientific hypotheses as uncertain data. This vision comprises a probabilistic database (p-DB) design methodology for the systematic…

Databases · Computer Science 2015-01-23 Bernardo Gonçalves , Fabio Porto

As data are increasingly modeled as graphs for expressing complex relationships, the tree pattern query on graph-structured data becomes an important type of queries in real-world applications. Most practical query languages, such as XQuery…

Databases · Computer Science 2015-03-19 Qiang Zeng , Xiaorui Jiang , Hai Zhuge

Recent trends in information management involve the periodic transcription of data onto secondary devices in a networked environment, and the proper scheduling of these transcriptions is critical for efficient data management. To assist in…

Databases · Computer Science 2007-05-23 Avigdor Gal , Jonathan Eckstein

In Text-to-SQL semantic parsing, selecting the correct entities (tables and columns) for the generated SQL query is both crucial and challenging; the parser is required to connect the natural language (NL) question and the SQL query to the…

Computation and Language · Computer Science 2020-11-24 Sanxing Chen , Aidan San , Xiaodong Liu , Yangfeng Ji

We address the problem of supporting empirical probabilities in monadic logic databases. Though the semantics of multivalued logic programs has been studied extensively, the treatment of probabilities as results of statistical findings has…

Artificial Intelligence · Computer Science 2013-03-25 Raymond T. Ng , V. S. Subrahmanian

Thanks to information extraction and semantic Web efforts, search on unstructured text is increasingly refined using semantic annotations and structured knowledge bases. However, most users cannot become familiar with the schema of…

Information Retrieval · Computer Science 2012-12-27 Uma Sawant , Soumen Chakrabarti

We provide methods for in-database support of decision making under uncertainty. Many important decision problems correspond to selecting a package (bag of tuples in a relational database) that jointly satisfy a set of constraints while…

Databases · Computer Science 2021-03-12 Matteo Brucato , Nishant Yadav , Azza Abouzied , Peter J. Haas , Alexandra Meliou

With the expeditious advancement of information technologies, health-related data presented unprecedented potentials for medical and health discoveries but at the same time significant challenges for machine learning techniques both in…

Machine Learning · Computer Science 2018-11-05 Shuo Yang

The need for discovering knowledge from XML documents according to both structure and content features has become challenging, due to the increase in application contexts for which handling both structure and content information in XML data…

Databases · Computer Science 2015-04-17 Olfa Arfaoui , Minyar Sassi Hidri

We show that for every conjunctive query, the complexity of evaluating it on a probabilistic database is either \PTIME or #\P-complete, and we give an algorithm for deciding whether a given conjunctive query is \PTIME or #\P-complete. The…

Databases · Computer Science 2007-05-23 Nilesh Dalvi , Dan Suciu

Graph similarity search algorithms usually leverage the structural properties of a database. Hence, these algorithms are effective only on some structural variations of the data and are ineffective on other forms, which makes them hard to…

Databases · Computer Science 2021-04-01 Yodsawalai Chodpathumwan , Arash Termehchy , Stephen A. Ramsey , Aayam Shresta , Amy Glen , Zheng Liu

Tabular data is difficult to analyze and to search through, yielding for new tools and interfaces that would allow even non tech-savvy users to gain insights from open datasets without resorting to specialized data analysis tools or even…

Information Retrieval · Computer Science 2017-08-31 Svitlana Vakulenko , Vadim Savenkov

Large scale initiatives such as the Human Genome Project, Structural Genomics, and individual research teams have provided large deposits of genomic and proteomic data. The transfer of data to knowledge has become one of the existing…

Databases · Computer Science 2019-11-21 Casey A Cole , Christopher Ott , Diego Valdes , Homayoun Valafar

The sheer scale of high-resolution raw data generated by simulation has motivated non-conventional approaches for data exploration referred as `immersive' and `in situ' query processing of the raw simulation data. Another step towards…

Databases · Computer Science 2015-08-25 Bernardo Gonçalves , Fabio Porto

Graph databases have become essential tools for managing complex and interconnected data, which is common in areas like social networks, bioinformatics, and recommendation systems. Unlike traditional relational databases, graph databases…

Databases · Computer Science 2026-02-24 Miguel E. Coimbra , Lucie Svitáková , Domagoj Vrgoč , Alexandre P. Francisco , Luís Veiga