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We develop a new statistical procedure to monitor, with opportunist data, relative species abundances and their respective preferences for dierent habitat types. Following Giraud et al. (2015), we combine the opportunistic data with some…

Applications · Statistics 2017-06-27 Camille Coron , Clément Calenge , Christophe Giraud , Romain Julliard

1. Predicting space use patterns of animals from their interactions with the environment is fundamental for understanding the effect of habitat changes on ecosystem functioning. Recent attempts to address this problem have sought to unify…

Quantitative Methods · Quantitative Biology 2015-01-23 Jonathan R. Potts , Guillaume Bastille-Rousseau , Dennis L. Murray , James A. Schaefer , Mark A. Lewis

Occupancy models are frequently used by ecologists to quantify spatial variation in species distributions while accounting for observational biases in the collection of detection-nondetection data. However, the common assumption that a…

The outcome of competition among species is influenced by the spatial distribution of species and effects such as demographic stochasticity, immigration fluxes, and the existence of preferred habitats. We introduce an individual-based model…

Populations and Evolution · Quantitative Biology 2010-07-19 Simone Pigolotti , Massimo Cencini

Citizen science biodiversity data present great opportunities for ecology and conservation across vast spatial and temporal scales. However, the opportunistic nature of these data lacks the sampling structure required by modeling…

Machine Learning · Computer Science 2025-04-15 Nahian Ahmed , Mark Roth , Tyler A. Hallman , W. Douglas Robinson , Rebecca A. Hutchinson

1. Anthropogenic actions cause rapid ecological changes, meaning that animals have to respond before they have time to adapt. Tools to quantify emergent spatial patterns from animal-habitat interaction mechanisms are vital for predicting…

Populations and Evolution · Quantitative Biology 2015-01-06 Jonathan R. Potts , Karl Mokross , Philip C Stouffer , Mark A. Lewis

To study population dynamics, ecologists and wildlife biologists use relative abundance data, which are often subject to temporal preferential sampling. Temporal preferential sampling occurs when sampling effort varies across time. To…

Methodology · Statistics 2022-12-14 Michael R. Schwob , Mevin B. Hooten , Travis McDevitt-Galles

For many taxonomic groups, online biodiversity portals used by naturalists and citizen scientists constitute the primary source of distributional information. Over the last decade, site-occupancy models have been advanced as a promising…

Abundance data are used in ecology for species monitoring and conservation. These count data often display several specific characteristics like numerous missing data, high variance, and a high proportion of zeros, particularly when…

The occurrence and distributions of wildlife populations and communities are shifting as a result of global changes. To evaluate whether these shifts are negatively impacting biodiversity processes, it is critical to monitor the status,…

Populations and Evolution · Quantitative Biology 2021-09-07 Jeffrey W. Doser , Wendy Leuenberger , T. Scott Sillett , Michael T. Hallworth , Elise F. Zipkin

Understanding the combined effects of climate change and habitat fragmentation on the adaptive potential of plant populations is essential for devising effective conservation strategies. This is particularly important where mating system…

Populations and Evolution · Quantitative Biology 2023-10-25 Frederik Van Daele , Olivier Honnay , Hanne De Kort

Secondary forests now dominate tropical landscapes and play a crucial role in achieving COP15 conservation objectives. This study develops a replicable national approach to identifying and characterising forest ecosystems, with a focus on…

Large image collections generated from camera traps offer valuable insights into species richness, occupancy, and activity patterns, significantly aiding biodiversity monitoring. However, the manual processing of these datasets is…

We study a mathematical model inspired by a common scenario in northern Patagonia consisting of humans and their livestock living together with native wildlife. The main production system in this area is sheep farming, which due to wrong…

Populations and Evolution · Quantitative Biology 2019-02-01 Y. C. Daza C. , M. F. Laguna , J. A. Monjeau , G. Abramson

Species distribution models (SDMs) are widely used to predict species' geographic distributions, serving as critical tools for ecological research and conservation planning. Typically, SDMs relate species occurrences to environmental…

Machine Learning · Computer Science 2025-08-12 Hager Radi Abdelwahed , Mélisande Teng , Robin Zbinden , Laura Pollock , Hugo Larochelle , Devis Tuia , David Rolnick

Improved monitoring and associated inferential tools to efficiently identify declining bird populations, particularly of rare or sparsely distributed species, is key to informed conservation and management across large spatio-temporal…

Populations and Evolution · Quantitative Biology 2021-09-07 Jeffrey W. Doser , Aaron S. Weed , Elise F. Zipkin , Kathryn M. Miller , Andrew O. Finley

Demography of herbivorous mammal populations may be affected by changes in predation, population density, harvesting, and climate. Whereas numerous studies have focused on the effect of single environmental variables on individual…

Populations and Evolution · Quantitative Biology 2025-07-08 Anouch Tamian , Vincent A Viblanc , Stephen Dobson , Claire Saraux

Traditional forest inventory systems, originally designed to quantify merchantable timber volume, often lack the spatial resolution and structural detail required for modern multi-resource ecosystem management. In this manuscript, we…

Applications · Statistics 2026-02-13 Maxime Turgeon , Michael Kieser , Dwight Wolfe , Bruce MacArthur

We analyze the long term behavior of interacting populations which can be controlled through harvesting. The dynamics is assumed to be discrete in time and stochastic due to the effect of environmental fluctuations. We present extinction…

Populations and Evolution · Quantitative Biology 2021-02-18 Alexandru Hening

The presence of species provides key insights into the ecological properties of a location such as land cover, climatic conditions or even soil properties. We propose a method to predict such ecological properties directly from remote…

Computer Vision and Pattern Recognition · Computer Science 2025-04-29 Valerie Zermatten , Javiera Castillo-Navarro , Pallavi Jain , Devis Tuia , Diego Marcos
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