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Scanning Transmission Electron Microscopy (STEM) enables the observation of atomic arrangements at sub-angstrom resolution, allowing for atomically resolved analysis of the physical and chemical properties of materials. However, due to the…

Computer Vision and Pattern Recognition · Computer Science 2025-04-04 Hesong Li , Ziqi Wu , Ruiwen Shao , Tao Zhang , Ying Fu

The interference of fluorescence signals and noise remains a significant challenge in Raman spectrum analysis, often obscuring subtle spectral features that are critical for accurate analysis. Inspired by variational methods similar to…

Image and Video Processing · Electrical Eng. & Systems 2025-12-08 Nelson H. T. Lemes , José Claudinei Ferreira , Higor V. M. Ferreira

The potential of neural networks (NN) in engineering is rooted in their capacity to understand intricate patterns and complex systems, leveraging their universal nonlinear approximation capabilities and high expressivity. Meanwhile,…

Computational Engineering, Finance, and Science · Computer Science 2025-01-23 Mohammed Abda , Elsa Piollet , Christopher Blake , Frédérick P. Gosselin

We introduce PhenixCraft, a fully automated pipeline for building atomic models from cryo-EM density maps. By integrating AlphaFold predictions, we enhance the map-segmentation step in Phenix during model building, addressing challenges…

Biomolecules · Quantitative Biology 2026-05-08 Chenwei Zhang

Simulation of fracturing processes in porous rocks can be divided into two main branches: (i) modeling the rock as a continuum which is enhanced with special features to account for fractures, or (ii) modeling the rock by a discrete (or…

Numerical Analysis · Mathematics 2017-02-07 Halvor Møll Nilsen , Idar Larsen , Xavier Raynaud

Codes were written to simulate the propagation of monochromatic light through a bare optical resonator, using a computational Fourier method to solve the Huygens-Fresnel integral. This was used, in the Fox-Li method, to find the lowest-loss…

Optics · Physics 2009-09-29 Jarvist Frost

This manuscript presents the Quantum Finite Element Method (Q-FEM) developed for use in noisy intermediate-scale quantum (NISQ) computers and employs the variational quantum linear solver (VQLS) algorithm. The proposed method leverages the…

Quantum Physics · Physics 2025-04-01 Abhishek Arora , Benjamin M. Ward , Caglar Oskay

We study a ferromagnetic instability in a single-band Hubbard model on the hypercubic lattice away from half filling. Using dynamical mean-field theory with the continuous-time quantum Monte Carlo simulations based on the segment algorithm,…

Strongly Correlated Electrons · Physics 2024-06-19 Akihisa Koga , Yusuke Kamogawa , Joji Nasu

Simplifying the constitutive behaviour of a material in terms of the lumped parameter elements is useful to design plant models in control engineering. In this contribution, a lumped parameter modelling approach is used to represent the…

Soft Condensed Matter · Physics 2015-12-03 S. Maniprakash

In Valence Change Memory (VCM) cells, the conductance of an insulating switching layer is reversibly modulated by creating and redistributing point defects under an external field. Accurate simulations of the switching dynamics of these…

Disordered Systems and Neural Networks · Physics 2023-01-02 Manasa Kaniselvan , Mathieu Luisier , Marko Mladenović

Atomic force microscopy (AFM) is a key tool for characterising nanoscale structures, with functionalised tips now offering detailed images of the atomic structure. In parallel, AFM simulations using the particle probe model provide a…

Materials Science · Physics 2025-09-03 Jie Huang , Niko Oinonen , Fabio Priante , Filippo Federici Canova , Lauri Kurki , Chen Xu , Adam S. Foster

Finding the distribution of vibro-acoustic energy in complex built-up structures in the mid-to-high frequency regime is a difficult task. In particular, structures with large variation of local wavelengths and/or characteristic scales pose…

Chaotic Dynamics · Physics 2015-05-20 Dmitrii N Maksimov , Gregor Tanner

A new method for examining the possible space-time variation of the fine structure constant ($\alpha$) is proposed. The technique uses a relatively simple measurement with an optical resonator to compare atom-stabilized optical frequency…

Atomic Physics · Physics 2007-05-23 J. R. Torgerson

We introduce a novel hybrid methodology combining classical finite element methods (FEM) with neural networks to create a well-performing and generalizable surrogate model for forward and inverse problems. The residual from finite element…

Computational Engineering, Finance, and Science · Computer Science 2022-05-18 Rishith Ellath Meethal , Birgit Obst , Mohamed Khalil , Aditya Ghantasala , Anoop Kodakkal , Kai-Uwe Bletzinger , Roland Wüchner

We present a formalism to discern the effects of fluctuations of the spacetime metric on electromagnetic radiation. The formalism works via the measurement of electromagnetic field correlations, while allowing a clear assessment of the…

General Relativity and Quantum Cosmology · Physics 2024-04-09 B. Sharmila , Sander M. Vermeulen , Animesh Datta

Ultracold-atom simulations of the Hubbard model provide insights into the character of charge and spin correlations in and out of equilibrium. The corresponding numerical simulations, on the other hand, remain a significant challenge. We…

Strongly Correlated Electrons · Physics 2023-01-25 Veljko Janković , Jakša Vučičević

Computational modelling offers a cost-effective and time-efficient alternative to experimental studies in biomedical engineering. In cardiac electro-mechanics, finite element method (FEM)-based simulations provide valuable insights into…

Computational Engineering, Finance, and Science · Computer Science 2025-08-20 Tan Tran , Denisa Martonova , Sigrid Leyendecker

We investigate evolution of the quantum coherence in the ultracold mixture of fermionic atoms and bosonic dimer molecules. Interactions are there experimentally controlled via tuning the external magnetic field. Consequently, the fermionic…

Superconductivity · Physics 2015-06-25 T. Domanski

We report on the investigation of an approach for modelling light transmission through systems consisting of several jointed optical fibres, in which the analytical modelling of the waveguides was replaced by Finite Element Modelling (FEM)…

Applied Physics · Physics 2018-07-31 Natascia Castagna , Jacques Morel , Luc Testa , Sven Burger

The Fermilab crystal-extraction experiment E853 at Tevatron was simulated by Monte Carlo code CATCH [1] tested earlier in the CERN-SPS experiment [2-4]. Predictions for the extraction efficiency, angular scans and extracted beam profiles…

High Energy Physics - Experiment · Physics 2008-11-26 Valery M. Biryukov
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