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This paper presents a new, parallel implementation of clustering and demonstrates its utility in greatly speeding up the process of identifying homologous proteins. Clustering is a technique to reduce the number of comparison needed to find…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-08-29 Stuart Byma , Akash Dhasade , Adrian Altenhoff , Christophe Dessimoz , James R. Larus

We present a novel approach for finding and evaluating structural models of small metallic nanoparticles. Rather than fitting a single model with many degrees of freedom, the approach algorithmically builds libraries of nanoparticle…

Patchwork learning arises as a new and challenging data collection paradigm where both samples and features are observed in fragmented subsets. Due to technological limits, measurement expense, or multimodal data integration, such patchwork…

Methodology · Statistics 2024-06-21 Lili Zheng , Andersen Chang , Genevera I. Allen

Vertex cover is one of the classical NP-complete problems in theoretical computer science. A vertex cover of a graph is a subset of vertices such that for each edge at least one of the two endpoints is contained in the subset. When studied…

Disordered Systems and Neural Networks · Physics 2007-05-23 Wolfgang Barthel , Alexander K. Hartmann

High-dimensional datasets often contain multiple meaningful clusterings in different subspaces. For example, objects can be clustered either by color, weight, or size, revealing different interpretations of the given dataset. A variety of…

Machine Learning · Computer Science 2025-04-08 Collin Leiber , Dominik Mautz , Claudia Plant , Christian Böhm

Co-clustering is a specific type of clustering that addresses the problem of finding groups of objects without necessarily considering all attributes. This technique has shown to have more consistent results in high-dimensional sparse data…

Machine Learning · Computer Science 2021-10-28 Yuri Santos , Jônata Tyska , Vania Bogorny

This paper revisits cluster-based retrieval that partitions the inverted index into multiple groups and skips the index partially at cluster and document levels during online inference using a learned sparse representation. It proposes an…

Information Retrieval · Computer Science 2024-04-16 Yifan Qiao , Shanxiu He , Yingrui Yang , Parker Carlson , Tao Yang

One important tool is the optimal clustering of data into useful categories. Dividing similar objects into a smaller number of clusters is of importance in many applications. These include search engines, monitoring of academic performance,…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-09-21 Gavriel Yarmish , Philip Listowsky , Simon Dexter

Existing image complexity metrics cannot distinguish meaningful content from noise. This means that white noise images, which contain no meaningful information, are judged as highly complex. We present a new image complexity metric through…

Computer Vision and Pattern Recognition · Computer Science 2023-08-24 Louis Mahon , Thomas Lukasiewicz

Correlation clustering is a technique for aggregating data based on qualitative information about which pairs of objects are labeled 'similar' or 'dissimilar.' Because the optimization problem is NP-hard, much of the previous literature…

Machine Learning · Computer Science 2017-03-20 Nate Veldt , Anthony Wirth , David F. Gleich

A least squares semi-supervised local clustering algorithm based on the idea of compressed sensing is proposed to extract clusters from a graph with known adjacency matrix. The algorithm is based on a two-stage approach similar to the one…

Machine Learning · Computer Science 2022-11-01 Ming-Jun Lai , Zhaiming Shen

We propose a new model-independent method for new physics searches called Cluster Scanning. It uses the k-means algorithm to perform clustering in the space of low-level event or jet observables, and separates potentially anomalous clusters…

High Energy Physics - Phenomenology · Physics 2024-05-22 Ivan Oleksiyuk , John Andrew Raine , Michael Krämer , Svyatoslav Voloshynovskiy , Tobias Golling

When it comes to clustering nonconvex shapes, two paradigms are used to find the most suitable clustering: minimum cut and maximum density. The most popular algorithms incorporating these paradigms are Spectral Clustering and DBSCAN. Both…

Machine Learning · Computer Science 2019-07-02 Sibylle Hess , Wouter Duivesteijn , Philipp Honysz , Katharina Morik

Spectral clustering is one of the most prominent clustering approaches. The distance-based similarity is the most widely used method for spectral clustering. However, people have already noticed that this is not suitable for multi-scale…

Machine Learning · Computer Science 2020-09-11 Hengrui Wang , Yubo Zhang , Mingzhi Chen , Tong Yang

A subset of vertices of a graph is minimal if, within all subsets of the same size, its vertex boundary is minimal. We give a complete, geometric characterization of minimal sets for the planar integer lattice X. Our characterization…

Combinatorics · Mathematics 2020-09-28 Radhika Gupta , Ivan Levcovitz , Alexander Margolis , Emily Stark

We continue the investigation of problems concerning correlation clustering or clustering with qualitative information, which is a clustering formulation that has been studied recently. The basic setup here is that we are given as input a…

Data Structures and Algorithms · Computer Science 2007-05-23 Ioannis Giotis , Venkatesan Guruswami

We propose a new method for clustering based on the local minimization of the \gamma-divergence, which we call the spontaneous clustering. The greatest advantage of the proposed method is that it automatically detects the number of clusters…

Methodology · Statistics 2013-05-01 Akifumi Notsu , Osamu Komori , Shinto Eguchi

Spectral clustering is a powerful method for finding structure in a dataset through the eigenvectors of a similarity matrix. It often outperforms traditional clustering algorithms such as $k$-means when the structure of the individual…

Numerical Analysis · Mathematics 2019-04-26 Paola Favati , Grazia Lotti , Ornella Menchi , Francesco Romani

Spectral clustering is a popular method for community detection in network graphs: starting from a matrix representation of the graph, the nodes are clustered on a low dimensional projection obtained from a truncated spectral decomposition…

Machine Learning · Statistics 2022-08-10 Francesco Sanna Passino , Nicholas A. Heard , Patrick Rubin-Delanchy

The objective of clustering is to discover natural groups in datasets and to identify geometrical structures which might reside there, without assuming any prior knowledge on the characteristics of the data. The problem can be seen as…

Computational Geometry · Computer Science 2018-01-26 Luis-Evaristo Caraballo , José-Miguel Díaz-Báñez , Nadine Kroher