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Biomedical named entity recognition (NER) is a critial task that aims to identify structured information in clinical text, which is often replete with complex, technical terms and a high degree of variability. Accurate and reliable NER can…

Computation and Language · Computer Science 2023-05-30 Zhiyi Li , Shengjie Zhang , Yujie Song , Jungyeul Park

Accurate ground truth estimation in medical screening programs often relies on coalitions of experts and peer second opinions. Algorithms that efficiently aggregate noisy annotations can enhance screening workflows, particularly when data…

Machine Learning · Computer Science 2025-10-07 Tim Bary , Tiffanie Godelaine , Axel Abels , Benoît Macq

We propose Iterative Facuality Refining on Informative Scientific Question-Answering (ISQA) feedback\footnote{Code is available at \url{https://github.com/lizekai-richard/isqa}}, a method following human learning theories that employs…

Computation and Language · Computer Science 2024-04-23 Zekai Li , Yanxia Qin , Qian Liu , Min-Yen Kan

While recent works have been considerably improving the quality of the natural language explanations (NLEs) generated by a model to justify its predictions, there is very limited research in detecting and alleviating inconsistencies among…

Computation and Language · Computer Science 2023-06-06 Myeongjun Jang , Bodhisattwa Prasad Majumder , Julian McAuley , Thomas Lukasiewicz , Oana-Maria Camburu

The unstructured nature of clinical notes within electronic health records often conceals vital patient-related information, making it challenging to access or interpret. To uncover this hidden information, specialized Natural Language…

In this paper, we investigate how semantic relations between concepts extracted from medical documents can be employed to improve the retrieval of medical literature. Semantic relations explicitly represent relatedness between concepts and…

Information Retrieval · Computer Science 2019-05-06 Maristella Agosti , Giorgio Maria Di Nunzio , Stefano Marchesin , Gianmaria Silvello

Extracting structured information from clinical notes requires navigating a dense web of interdependent variables where the value of one attribute logically constrains others. Existing Large Language Model (LLM)-based extraction pipelines…

Negative and uncertain medical findings are frequent in radiology reports, but discriminating them from positive findings remains challenging for information extraction. Here, we propose a new algorithm, NegBio, to detect negative and…

Computation and Language · Computer Science 2017-12-29 Yifan Peng , Xiaosong Wang , Le Lu , Mohammadhadi Bagheri , Ronald Summers , Zhiyong Lu

News recommendation is important for online news services. Precise user interest modeling is critical for personalized news recommendation. Existing news recommendation methods usually rely on the implicit feedback of users like news clicks…

Information Retrieval · Computer Science 2021-01-13 Chuhan Wu , Fangzhao Wu , Yongfeng Huang , Xing Xie

Retrieval-augmented generation combined with reinforcement learning has shown promise for grounding large language models in trustworthy medical evidence. However, existing methods rely on exact-match binary rewards, which in clinical…

Artificial Intelligence · Computer Science 2026-05-28 Yuwei Miao , Gen Li , Yunsheng Zeng , Xiandong Li , Yujin Wang , Siyu Chen , Luning Wang , Yunhao Qiao , Junfeng Wang , Jianwei Lv , Bo Yuan

Negative sampling approaches are prevalent in implicit collaborative filtering for obtaining negative labels from massive unlabeled data. As two major concerns in negative sampling, efficiency and effectiveness are still not fully achieved…

Machine Learning · Computer Science 2020-09-09 Jingtao Ding , Yuhan Quan , Quanming Yao , Yong Li , Depeng Jin

Voice search is becoming a popular mode for interacting with search engines. As a result, research has gone into building better voice transcription engines, interfaces, and search engines that better handle inherent verbosity of queries.…

Information Retrieval · Computer Science 2013-12-17 Apoorv Narang , Srikanta Bedathur

Researchers and developers increasingly rely on toxicity scoring to moderate generative language model outputs, in settings such as customer service, information retrieval, and content generation. However, toxicity scoring may render…

Human-Computer Interaction · Computer Science 2024-04-23 Jennifer Chien , Kevin R. McKee , Jackie Kay , William Isaac

Large Language Models (LLMs) have swiftly emerged as vital resources for different applications in the biomedical and healthcare domains; however, these models encounter issues such as generating inaccurate information or hallucinations.…

Computation and Language · Computer Science 2024-05-06 Mingchen Li , Halil Kilicoglu , Hua Xu , Rui Zhang

This article evaluates the performance of two techniques for query reformulation in a system for information retrieval, namely, the concept based and the pseudo relevance feedback reformulation. The experiments performed on a corpus of…

Information Retrieval · Computer Science 2014-03-19 Mohammed El Amine Abderrahim

Patients have long sought health information online, and increasingly, they are turning to generative AI to answer their health-related queries. Given the high stakes of the medical domain, techniques like retrieval-augmented generation and…

Computation and Language · Computer Science 2025-06-11 Lionel Wong , Ayman Ali , Raymond Xiong , Shannon Zeijang Shen , Yoon Kim , Monica Agrawal

A class of explainable NLP models for reasoning tasks support their decisions by generating free-form or structured explanations, but what happens when these supporting structures contain errors? Our goal is to allow users to interactively…

Computation and Language · Computer Science 2021-04-20 Aman Madaan , Niket Tandon , Dheeraj Rajagopal , Yiming Yang , Peter Clark , Keisuke Sakaguchi , Ed Hovy

Many recent advances in natural language generation have been fueled by training large language models on internet-scale data. However, this paradigm can lead to models that generate toxic, inaccurate, and unhelpful content, and automatic…

Semantic concepts and relations encoded in domain-specific ontologies and other medical semantic resources play a crucial role in deciphering terms in medical queries and documents. The exploitation of these resources for tackling the…

Information Retrieval · Computer Science 2020-05-19 Mohammed Maree , Israa Noor , Khaled Rabayah , Mohammed Belkhatir , Saadat M. Alhashmi

Information extraction from conversational data is particularly challenging because the task-centric nature of conversation allows for effective communication of implicit information by humans, but is challenging for machines. The…

Computation and Language · Computer Science 2022-06-23 Sopan Khosla , Shikhar Vashishth , Jill Fain Lehman , Carolyn Rose
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