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One of the most useful measures of cluster quality is the modularity of a partition, which measures the difference between the number of the edges joining vertices from the same cluster and the expected number of such edges in a random…

Data Analysis, Statistics and Probability · Physics 2009-09-29 Hristo Djidjev

We devise new cut sparsifiers that are related to the classical sparsification of Nagamochi and Ibaraki [Algorithmica, 1992], which is an algorithm that, given an unweighted graph $G$ on $n$ nodes and a parameter $k$, computes a subgraph…

Data Structures and Algorithms · Computer Science 2021-11-01 Amir Abboud , Robert Krauthgamer , Ohad Trabelsi

Network reconstruction consists in determining the unobserved pairwise couplings between $N$ nodes given only observational data on the resulting behavior that is conditioned on those couplings -- typically a time-series or independent…

Data Structures and Algorithms · Computer Science 2024-05-08 Tiago P. Peixoto

For a set of $n$ points in the plane, this paper presents simple kinetic data structures (KDS's) for solutions to some fundamental proximity problems, namely, the all nearest neighbors problem, the closest pair problem, and the Euclidean…

Computational Geometry · Computer Science 2014-01-07 Zahed Rahmati , Mohammad Ali Abam , Valerie King , Sue Whitesides , Alireza Zarei

Given a reference set $R$ of $n$ points and a query set $Q$ of $m$ points in a metric space, this paper studies an important problem of finding $k$-nearest neighbors of every point $q \in Q$ in the set $R$ in a near-linear time. In the…

Computational Geometry · Computer Science 2024-03-05 Yury Elkin , Vitaliy Kurlin

The correlated Erd\"os-R\'enyi random graph ensemble is a probability law on pairs of graphs with $n$ vertices, parametrized by their average degree $\lambda$ and their correlation coefficient $s$. It can be used as a benchmark for the…

Disordered Systems and Neural Networks · Physics 2024-11-21 Andrea Muratori , Guilhem Semerjian

We consider the standard message passing model; we assume the system is fully synchronous: all processes start at the same time and time proceeds in synchronised rounds. In each round each vertex can transmit a different message of size…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-07-14 Y. Métivier , J. M. Robson , A. Zemmari

Proximity graph-based methods have emerged as a leading paradigm for approximate nearest neighbor (ANN) search in the system community. This paper presents fresh insights into the theoretical foundation of these methods. We describe an…

Data Structures and Algorithms · Computer Science 2025-09-10 Shangqi Lu , Yufei Tao

In this paper, we present several improvements in the parallelization of the in-place merge algorithm, which merges two contiguous sorted arrays into one with an O(T) space complexity (where T is the number of threads). The approach divides…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-05-27 Berenger Bramas , Quentin Bramas

Graph isomorphism problem is a known hard problem. In this paper, a novel randomized algorithm is proposed for this problem which is very simple and fast. It solves the graph isomorphism problem with running time O(n^2.373) for any pair of…

Combinatorics · Mathematics 2019-09-25 Ameneh Farhadian

We present a novel method of robust probabilistic cosmic web particle classification in three dimensions using a supervised machine learning algorithm. Training data was generated using a simplified $\Lambda$CDM toy model with…

Cosmology and Nongalactic Astrophysics · Physics 2020-09-10 Brandon Buncher , Matias Carrasco Kind

We introduce a family of reductions for removing proper and homogeneous pairs of cliques from a graph G. This family generalizes some routines presented in the literature, mostly in the context of claw-free graphs. These reductions can be…

Optimization and Control · Mathematics 2011-03-15 Yuri Faenza , Gianpaolo Oriolo , Claudia Snels

Building upon the efficient implementation of hybrid density functionals (HDFs) for large-scale periodic systems within the framework of numerical atomic orbital bases using the localized resolution of identity (RI) technique, we have…

Computational Physics · Physics 2025-07-03 Yu Cao , Min-Ye Zhang , Peize Lin , Mohan Chen , Xinguo Ren

We show fast deterministic algorithms for fundamental problems on forests in the challenging low-space regime of the well-known Massive Parallel Computation (MPC) model. A recent breakthrough result by Coy and Czumaj [STOC'22] shows that,…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-11-08 Alkida Balliu , Rustam Latypov , Yannic Maus , Dennis Olivetti , Jara Uitto

The Stokeslet and stresslet kernels are commonly used in boundary element simulations and singularity methods for slow viscous flow. Evaluating the velocity induced by a collection of Stokeslets and stresslets by direct summation requires…

Numerical Analysis · Mathematics 2019-08-30 Lei Wang , Svetlana Tlupova , Robert Krasny

Dynamic programming is widely used for exact computations based on tree decompositions of graphs. However, the space complexity is usually exponential in the treewidth. We study the problem of designing efficient dynamic programming…

Data Structures and Algorithms · Computer Science 2014-06-16 Martin Furer , Huiwen Yu

We describe a space-efficient algorithm for solving a generalization of the subset sum problem in a finite group G, using a Pollard-rho approach. Given an element z and a sequence of elements S, our algorithm attempts to find a subsequence…

Number Theory · Mathematics 2012-06-26 Gaetan Bisson , Andrew V. Sutherland

We give two new approximation algorithms to compute the fractional hypertree width of an input hypergraph. The first algorithm takes as input $n$-vertex $m$-edge hypergraph $H$ of fractional hypertree width at most $\omega$, runs in…

Data Structures and Algorithms · Computer Science 2024-10-01 Viktoriia Korchemna , Daniel Lokshtanov , Saket Saurabh , Vaishali Surianarayanan , Jie Xue

Three popular algorithms (FOF, DENMAX, and SKID) to identify halos in cosmological N-body simulations are compared with each other and with the predicted mass function from Press-Schechter theory. It is shown that the resulting distribution…

Astrophysics · Physics 2007-05-23 M. Goetz , J. P. Huchra , R. H. Brandenberger

We improve the running time of the general algorithmic technique known as Baker's approach (1994) on H-minor-free graphs from O(n^{f(|H|)}) to O(f(|H|) n^{O(1)}). The numerous applications include e.g. a 2-approximation for coloring and…

Data Structures and Algorithms · Computer Science 2015-05-18 Siamak Tazari
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