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We introduce a model for describing the dynamics of large numbers of interacting cells. The fundamental dynamical variables in the model are sub-cellular elements, which interact with each other through phenomenological intra- and…

Quantitative Methods · Quantitative Biology 2007-05-23 T. J. Newman

Modern scripting languages and database tools combined provide a new framework for developing beam-line control and data management software. The CARPS system supports data collection by storing low level beam-line control commands in a…

Instrumentation and Detectors · Physics 2007-05-23 Keith Brister

Cooperative systems are systems in which the forces among agents are non-repulsive. The free evolution of such systems can tend to the formation of patterns, such as consensus or clustering, depending on the properties and intensity of the…

Optimization and Control · Mathematics 2019-02-26 Benoît Bonnet , Francesco Rossi

Spatial autoregressive combined (SAC) model has been widely studied in the literature for the analysis of spatial data in various areas such as geography, economics, demography, regional sciences. This is a linear model with scalar…

Methodology · Statistics 2020-04-17 Alassane Aw , Emmanuel Nicolas Cabral

In model-based reinforcement learning, generative and temporal models of environments can be leveraged to boost agent performance, either by tuning the agent's representations during training or via use as part of an explicit planning…

Spatial constraint systems (scs) are semantic structures for reasoning about spatial and epistemic information in concurrent systems. They have been used to reason about beliefs, lies, and group epistemic behaviour inspired by social…

Multiagent Systems · Computer Science 2019-08-26 Frank Valencia

The paper shows how to use the R package yuima available on CRAN for the simulation and the estimation of a general L\'evy Continuous Autoregressive Moving Average (CARMA) model. The flexibility of the package is due to the fact that the…

Computation · Statistics 2014-09-11 Stefano M. Iacus , Lorenzo Mercuri

Complex behavioral contagion in collective evasion of mobile animal groups can be predicted by reconstructing quantitative interaction networks. Based on the assumption of time-scale separation between a fast contagion process and a slower…

Adaptation and Self-Organizing Systems · Physics 2024-08-12 Wenhan Wu , Xiaoping Zheng , Pawel Romanczuk

Accomplishing household tasks requires to plan step-by-step actions considering the consequences of previous actions. However, the state-of-the-art embodied agents often make mistakes in navigating the environment and interacting with…

Robotics · Computer Science 2024-03-14 Byeonghwi Kim , Jinyeon Kim , Yuyeong Kim , Cheolhong Min , Jonghyun Choi

Active subspace (AS) methods are a valuable tool for understanding the relationship between the inputs and outputs of a Physics simulation. In this paper, an elegant generalization of the traditional ASM is developed to assess the…

Methodology · Statistics 2024-07-23 Kellin N. Rumsey , Zachary K. Hardy , Cory Ahrens , Scott Vander Wiel

Modeling realistic human behaviour to understand people's mode choices in order to propose personalised mobility solutions remains challenging. This paper presents an architecture for modeling realistic human mobility behavior in complex…

Multiagent Systems · Computer Science 2025-10-23 Trung-Dung Vu , Benoit Gaudou , Kamaldeep Singh Oberoi

User interfaces that adapt their characteristics to those of the user are referred to as adaptive interfaces. We propose Adaptive Agent Oriented Software Architecture (AAOSA) as a new way of designing adaptive interfaces. AAOSA is a new…

Human-Computer Interaction · Computer Science 2007-05-23 Babak Hodjat , Makoto Amamiya

Conditional autoregressive (CAR) models are commonly used to capture spatial correlation in areal unit data, and are typically specified as a prior distribution for a set of random effects, as part of a hierarchical Bayesian model. The…

Applications · Statistics 2012-05-17 Duncan Lee , Richard Mitchell

1. Spatial memory plays a role in the way animals perceive their environments, resulting in memory-informed movement patterns that are observable to ecologists. Developing mathematical techniques to understand how animals use memory in…

Quantitative Methods · Quantitative Biology 2022-02-17 Peter R. Thompson , Andrew E. Derocher , Mark A. Edwards , Mark A. Lewis

As learning systems increasingly shape everyday decisions, Algorithmic Collective Action (ACA), i.e., users coordinating changes to shared data to steer model behavior, offers a complement to regulator-side policy and corporate model…

This paper is concerned with mathematical modeling of intelligent systems, such as human crowds and animal groups. In particular, the focus is on the emergence of different self-organized patterns from non-locality and anisotropy of the…

Mathematical Physics · Physics 2010-09-07 Emiliano Cristiani , Benedetto Piccoli , Andrea Tosin

Collective cell migration is a key driver of embryonic development, wound healing, and some types of cancer invasion. Here we provide a physical perspective of the mechanisms underlying collective cell migration. We begin with a catalogue…

Biological Physics · Physics 2019-10-08 Ricard Alert , Xavier Trepat

This article introduces a simulation platform to study complex crowd behavior in social context. The agent-based model is extended based on the social force model, and it mainly describes how agents interact with each other, and also with…

Physics and Society · Physics 2025-01-17 Peng Wang , Xiaoda Wang , Peter Luh , Neal Olderman , Christian Wilkie , Timo Korhonen

Spatial self-organization emerges in distributed systems exhibiting local interactions when nonlinearities and the appropriate propagation of signals are at work. These kinds of phenomena can be modeled with different frameworks, typically…

Cell Behavior · Quantitative Biology 2016-11-23 Adriano Bonforti , Salva Duran-Nebreda , Raul Montañez , Ricard Solé

Caging is a promising tool which allows a robot to manipulate an object without directly reasoning about the contact dynamics involved. Furthermore, caging also provides useful guarantees in terms of robustness to uncertainty, and often…

Robotics · Computer Science 2019-08-05 Bernardo Aceituno-Cabezas , Hongkai Dai , Alberto Rodriguez