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Persistent homology is a cornerstone of topological data analysis, offering a multiscale summary of topology with robustness to nuisance transformations, such as rotations and small deformations. Persistent homology has seen broad use…

Methodology · Statistics 2025-11-19 Zitian Wu , Arkaprava Roy , Leo L. Duan

Topo-Tomography (TT) is a synchrotron-based X-ray diffraction imaging technique used to characterize grain shape and crystal orientation in polycrystalline samples. This work aims to provide a decisive and fundamental understanding of 3D…

Computational Physics · Physics 2025-10-13 Zheheng Liu , Nicola Vigano , Henry Proudhon , Wolfgang Ludwig

Despite advances in feature representation, leveraging geometric relations is crucial for establishing reliable visual correspondences under large variations of images. In this work we introduce a Hough transform perspective on…

Computer Vision and Pattern Recognition · Computer Science 2021-09-14 Juhong Min , Seungwook Kim , Minsu Cho

Multiplexed imaging allows multiple cell types to be simultaneously visualised in a single tissue sample, generating unprecedented amounts of spatially-resolved, biological data. In topological data analysis, persistent homology provides…

Quantitative Methods · Quantitative Biology 2025-05-06 Maria Torras-Pérez , Iris H. R. Yoon , Praveen Weeratunga , Ling-Pei Ho , Helen M. Byrne , Ulrike Tillmann , Heather A. Harrington

The Hilbert-Huang transform (HHT) consists of empirical mode decomposition (EMD), which is a template-free method that represents the combination of different intrinsic modes on a time-frequency map (i.e., the Hilbert spectrum). The…

Instrumentation and Methods for Astrophysics · Physics 2025-06-05 Lupin Chun-Che Lin , Chin-Ping Hu , Chien-Chang Yen , Kuo-Chuan Pan , C. Y. Hui , Kwan-Lok Li , Yu-Chiung Lin , Yi-Sheng Huang , Albert K. H. Kong

In the search for binary systems inspiral signal in interferometric gravitational waves detectors, one needs the generation and placement of a grid of templates. We present an original technique for the placement in the associated parameter…

General Relativity and Quantum Cosmology · Physics 2009-11-11 F. Beauville , D. Buskulic , R. Flaminio , R. Gouaty , D. Grosjean , F. Marion , B. Mours , E. Tournefier , D. Verkindt , M. Yvert

The Mapper algorithm, a technique within topological data analysis (TDA), constructs a simplified graphical representation of high-dimensional data to uncover its underlying shape and structural patterns. The algorithm has attracted…

General Topology · Mathematics 2025-04-15 Vine Nwabuisi Madukpe , Bright Chukwuma Ugoala , Nur Fariha Syaqina Zulkepli

The unstructured and irregular nature of points poses a significant challenge for accurate point cloud quality assessment (PCQA), particularly in establishing accurate perceptual feature correspondence. To tackle this, we propose the…

Computer Vision and Pattern Recognition · Computer Science 2026-03-30 Zhang Chen , Shuai Wan , Yuezhe Zhang , Siyu Ren , Fuzheng Yang , Junhui Hou

Determining the optimal number and identity of structural clusters from an ensemble of molecular configurations continues to be a challenge. Recent structural clustering methods have focused on the use of internal coordinates due to the…

Chemical Physics · Physics 2023-01-11 Heidi Klem , Glen M. Hocky , Martin McCullagh

Symmetry is a fundamental tool in the exploration of a broad range of complex systems. In machine learning symmetry has been explored in both models and data. In this paper we seek to connect the symmetries arising from the architecture of…

Machine Learning · Computer Science 2023-03-27 Charles Godfrey , Davis Brown , Tegan Emerson , Henry Kvinge

Topic modeling analyzes documents to learn meaningful patterns of words. However, existing topic models fail to learn interpretable topics when working with large and heavy-tailed vocabularies. To this end, we develop the Embedded Topic…

Information Retrieval · Computer Science 2019-07-12 Adji B. Dieng , Francisco J. R. Ruiz , David M. Blei

Time series~(TS) modeling is essential in dynamic systems like weather prediction and anomaly detection. Recent studies utilize Large Language Models (LLMs) for TS modeling, leveraging their powerful pattern recognition capabilities. These…

Machine Learning · Computer Science 2024-10-23 Can Chen , Gabriel Oliveira , Hossein Sharifi Noghabi , Tristan Sylvain

The complexity of condensed matter arises from emergent behaviors that cannot be understood by analyzing individual constituents in isolation. While traditional condensed-matter approaches-developed primarily for ideal crystalline…

Materials Science · Physics 2025-09-30 Elisabetta Nocerino

Although deep learning has yielded impressive performance for face recognition, many studies have shown that different networks learn different feature maps: while some networks are more receptive to pose and illumination others appear to…

Computer Vision and Pattern Recognition · Computer Science 2017-02-16 Navaneeth Bodla , Jingxiao Zheng , Hongyu Xu , Jun-Cheng Chen , Carlos Castillo , Rama Chellappa

Understanding the structure of high-dimensional data is fundamental to neuroscience and other data-intensive scientific fields. While persistent homology effectively identifies basic topological features such as "holes," it lacks the…

Algebraic Topology · Mathematics 2025-07-16 Ekaterina S. Ivshina , Galit Anikeeva , Ling Zhou

As the field of Topological Data Analysis continues to show success in theory and in applications, there has been increasing interest in using tools from this field with methods for machine learning. Using persistent homology, specifically…

Computational Geometry · Computer Science 2020-02-26 Sarah Tymochko , Elizabeth Munch , Firas A. Khasawneh

Feature level sets (FLS) have shown significant potential in the analysis of multi-field data by using traits defined in attribute space to specify features in the domain. In this work, we address key challenges in the practical use of FLS:…

Machine Learning · Computer Science 2025-01-14 Danhua Lei , Jochen Jankowai , Petar Hristov , Hamish Carr , Leif Denby , Talha Bin Masood , Ingrid Hotz

We propose a new method for fine-grained few-shot recognition via deep object parsing. In our framework, an object is made up of K distinct parts and for each part, we learn a dictionary of templates, which is shared across all instances…

Computer Vision and Pattern Recognition · Computer Science 2022-10-14 Ruizhao Zhu , Pengkai Zhu , Samarth Mishra , Venkatesh Saligrama

We investigate the scalable image classification problem with a large number of categories. Hierarchical visual data structures are helpful for improving the efficiency and performance of large-scale multi-class classification. We propose a…

Computer Vision and Pattern Recognition · Computer Science 2017-09-18 Yanyun Qu , Li Lin , Fumin Shen , Chang Lu , Yang Wu , Yuan Xie , Dacheng Tao

Learning representations for graph-structured data is essential for graph analytical tasks. While remarkable progress has been made on static graphs, researches on temporal graphs are still in its beginning stage. The bottleneck of the…

Machine Learning · Computer Science 2023-03-16 Bowen Cao , Qichen Ye , Weiyuan Xu , Yuexian Zou