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The genome rearrangement problem computes the minimum number of operations that are required to sort all elements of a permutation. A block-interchange operation exchanges two blocks of a permutation which are not necessarily adjacent and…

Data Structures and Algorithms · Computer Science 2019-06-13 Md. Khaledur Rahman , M. Sohel Rahman

Given a pair of strings, the problems of computing their Longest Common Subsequence and Edit Distance have been extensively studied for decades. For exact algorithms, LCS and Edit Distance (with character insertions and deletions) are…

Data Structures and Algorithms · Computer Science 2019-04-12 Aviad Rubinstein , Zhao Song

In this paper we present algorithms for several string problems in the Congested Clique model. In the Congested Clique model, $n$ nodes (computers) are used to solve some problem. The input to the problem is distributed among the nodes, and…

Data Structures and Algorithms · Computer Science 2025-04-14 Shay Golan , Matan Kraus

The interest in channel models in which the data is sent as an unordered set of binary strings has increased lately, due to emerging applications in DNA storage, among others. In this paper we analyze the minimal redundancy of binary codes…

Information Theory · Computer Science 2019-10-29 Jin Sima , Netanel Raviv , Jehoshua Bruck

In this paper we compute the sharp lower bounds for the crossing number of $n$-string $k$-loop essential tangles. For essential tangles with only string components, we characterise the ones with the minimum crossing number for a given…

Geometric Topology · Mathematics 2017-08-30 João Miguel Nogueira , António Salgueiro

It is known that the majority of the human genome consists of repeated sequences. Furthermore, it is believed that a significant part of the rest of the genome also originated from repeated sequences and has mutated to its current form. In…

Information Theory · Computer Science 2014-01-21 Farzad Farnoud , Moshe Schwartz , Jehoshua Bruck

In this paper, we consider the problem of identifying patterns of interest in colored strings. A colored string is a string where each position is assigned one of a finite set of colors. Our task is to find substrings of the colored string…

Data Structures and Algorithms · Computer Science 2024-04-16 Zsuzsanna Lipták , Simon J. Puglisi , Massimiliano Rossi

We present an introductory investigation into continuous-space vector representations of sentences. We acquire pairs of very similar sentences differing only by a small alterations (such as change of a noun, adding an adjective, noun or…

Computation and Language · Computer Science 2019-10-09 Petra Barančíková , Ondřej Bojar

A shuffle of two strings is formed by interleaving the characters into a new string, keeping the characters of each string in order. A string is a square if it is a shuffle of two identical strings. There is a known polynomial time dynamic…

Computational Complexity · Computer Science 2012-12-03 Sam Buss , Michael Soltys

In nested Named entity recognition (NER), entities are nested with each other, and thus requiring more data annotations to address. This leads to the development of few-shot nested NER, where the prevalence of pretrained language models…

Computation and Language · Computer Science 2024-02-05 Meishan Zhang , Bin Wang , Hao Fei , Min Zhang

Motivated by studies of data retrieval in polymer-based storage systems, we consider the problem of reconstructing a multiset of binary strings that have the same length and the same weight from the compositions of their prefixes and…

Discrete Mathematics · Computer Science 2024-11-07 Yaoyu Yang , Zitan Chen

We obtain an upper and lower bound for the number of reduced words for a permutation in terms of the number of braid classes and the number of commutation classes of the permutation. We classify the permutations that achieve each of these…

Combinatorics · Mathematics 2018-08-06 Susanna Fishel , Elizabeth Milićević , Rebecca Patrias , Bridget Eileen Tenner

This work describes the number of restricted finite words in the alphabet A={a,b} required to identify an infinite word with some period n in the set of all infinite words in this alphabet given up to a shift. Also reviewed the case of…

Rings and Algebras · Mathematics 2013-01-15 Petr Lavrov

The ability to cheaply train text classifiers is critical to their use in information retrieval, content analysis, natural language processing, and other tasks involving data which is partly or fully textual. An algorithm for sequential…

cmp-lg · Computer Science 2008-02-03 David D. Lewis , William A. Gale

This work presents a comparison of machine learning algorithms that are implemented to segment the characters of text presented as an image. The algorithms are designed to work on degraded documents with text that is not aligned in an…

Computer Vision and Pattern Recognition · Computer Science 2021-07-29 P Preethi , Hrishikesh Viswanath

In the present paper we consider biologically motivated reduction operations on double occurrence words. Then we define the nesting index of a double occurrence word to be the least number of reduction operations it takes for a word to be…

Combinatorics · Mathematics 2013-11-15 Ryan Arredondo

We consider the problem of determining the maximum number of moves required to sort a permutation of $[n]$ using cut-and-paste operations, in which a segment is cut out and then pasted into the remaining string, possibly reversed. We give…

Combinatorics · Mathematics 2011-10-12 Daniel Cranston , I. Hal Sudborough , Douglas B. West

Nested sampling is an iterative integration procedure that shrinks the prior volume towards higher likelihoods by removing a "live" point at a time. A replacement point is drawn uniformly from the prior above an ever-increasing likelihood…

Computation · Statistics 2014-12-03 Johannes Buchner

Synchronization strings are recently introduced by Haeupler and Shahrasbi (STOC 2017) in the study of codes for correcting insertion and deletion errors (insdel codes). They showed that for any parameter $\varepsilon>0$, synchronization…

Information Theory · Computer Science 2018-03-12 Kuan Cheng , Bernhard Haeupler , Xin Li , Amirbehshad Shahrasbi , Ke Wu

Text clustering holds significant value across various domains due to its ability to identify patterns and group related information. Current approaches which rely heavily on a computed similarity measure between documents are often limited…

Information Retrieval · Computer Science 2025-04-09 Laurence Hirsch , Robin Hirsch , Bayode Ogunleye