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We model the immune surveillance of a pathogen which passes through $n$ immunologically distinct stages. The biological parameters of this system induce a partial order on the stages, and this, in turn, determines which stages will be…

Populations and Evolution · Quantitative Biology 2010-05-04 Edgar Delgado-Eckert , Michael Shapiro

Recent experimental results with humans involved in social dilemma games suggest that cooperation may be a contagious phenomenon and that the selection pressure operating on evolutionary dynamics (i.e., mimicry) is relatively weak. I…

Physics and Society · Physics 2012-10-02 Naoki Masuda

We study the evolution of cooperation in the spatial prisoner's dilemma game, where besides unconditional cooperation and defection, tit-for-tat, win-stay-lose-shift and extortion are the five competing strategies. While pairwise imitation…

Physics and Society · Physics 2014-07-02 Attila Szolnoki , Matjaz Perc

We study the cooperation problem in the framework of evolutionary game theory using the prisoner's dilemma as metaphor of the problem. Considering the growing process of the system and individuals with imitation capacity, we show conditions…

Computer Science and Game Theory · Computer Science 2015-06-11 Ignacio Gomez Portillo

Spatial structure is one of the simplest and most studied ecological factors that affect the evolution of cooperation. It has been shown that spatial reciprocity promotes cooperation due to the formation of cooperative clusters, which…

Populations and Evolution · Quantitative Biology 2020-06-24 Elton Júnior. S , Marco A. Amaral , Lucas Wardil

The nature of dispersal of many invasive pests and pathogens in agricultural and forestry makes it necessary to consider how the actions of one manager affect neighbouring properties. In addition to the direct effects of a potential spread…

Populations and Evolution · Quantitative Biology 2018-07-03 Adam Kleczkowski , Andrew Bate , Michael Redenti , Nick Hanley

We introduce a minimal model of multilevel selection on structured populations, considering the interplay between game theory and population dynamics. Through a bottleneck process, finite groups are formed with cooperators and defectors…

Populations and Evolution · Quantitative Biology 2023-10-02 Jeferson J. Arenzon , Luca Peliti

In biology, the evolution of increasingly cooperative groups has shaped the history of life. Genes collaborate in the control of cells; cells efficiently divide tasks to produce cohesive multicellular individuals; individual members of…

Populations and Evolution · Quantitative Biology 2011-12-15 Steven A. Frank

We develop a game-theoretic framework to investigate the effect of cooperation on the energy efficiency in wireless networks. We address two examples of network architectures, resembling ad-hoc network and network with central…

Networking and Internet Architecture · Computer Science 2014-05-19 Zoran Utkovski , Andrej Gajduk , Lasko Basnarkov , Darko Bosnakovski , Ljupco Kocarev

We present a two-species population model in a well-mixed environment where the dynamics involves, in addition to birth and death, changes due to environmental factors and inter-species interactions. The novel dynamical components are…

Biological Physics · Physics 2020-09-17 J. J. Dong , J. D. Russo , K. Sampson

Involution, a phenomenon of excessive competition with diminishing returns, has become a pressing socio-economic concern in contemporary China, prompting both academic inquiry and policy interventions. This paper proposes an evolutionary…

Physics and Society · Physics 2026-03-16 Bo Li , Qiwen Ge , Yong Shi

The goal of this study is to develop a computational model of the progression of changes in mitochondrial phenotype resulting from infection with pathogenic mycobacteria. This ultimately will enable a large-scale virulence screen of mutant…

Subcellular Processes · Quantitative Biology 2024-11-12 Shannon Quinn , Amr Abbadi , Seyed Alireza Vaezi , Russell K. Karls , Frederick D. Quinn

When microbes compete for limited resources, they often engage in chemical warfare using bacterial toxins. This competition can be understood in terms of evolutionary game theory (EGT). We study the predictions of EGT for the bacterial…

Populations and Evolution · Quantitative Biology 2013-11-07 Christoph Adami , Jory Schossau , Arend Hintze

Humans, domestic animals, orchard crops, and ornamental plants are commonly treated with antibiotics in response to bacterial infection. By curing infectious individuals, antibiotic therapy might limit the spread of contagious disease among…

Populations and Evolution · Quantitative Biology 2020-01-22 Thomas Caraco

Spatial evolutionary games provide a valuable framework for elucidating the emergence and maintenance of cooperative behavior. However, most previous studies assume that individuals are profiteers and neglect to consider the effects of…

Computer Science and Game Theory · Computer Science 2025-11-25 Bin Pi , Minyu Feng , Liang-Jian Deng

The vertebrate adaptive immune system provides a flexible and diverse set of molecules to neutralize pathogens. Yet, viruses such as HIV can cause chronic infections by evolving as quickly as the adaptive immune system, forming an…

Populations and Evolution · Quantitative Biology 2016-06-22 Armita Nourmohammad , Jakub Otwinowski , Joshua B. Plotkin

To be the fittest is central to proliferation in evolutionary games. Individuals thus adopt the strategies of better performing players in the hope of successful reproduction. In structured populations the array of those that are eligible…

Physics and Society · Physics 2010-12-09 Matjaz Perc , Zhen Wang

In bacterial populations, cells are able to cooperate in order to yield complex collective functionalities. Interest in population-level cellular behaviour is increasing, due to both our expanding knowledge of the underlying biological…

Multiagent Systems · Computer Science 2012-11-07 Angel Goni-Moreno , Martyn Amos

The evolution and long-term sustenance of cooperation has consistently piqued scholarly interest across the disciplines of evolutionary biology and social sciences. Previous theoretical and experimental studies on collective risk social…

Physics and Society · Physics 2023-08-23 Shijia Hua , Zitong Hui , Linjie Liu

The design of protocols to suppress the propagation of viral infections is an enduring enterprise, especially hindered by limited knowledge of the mechanisms through which extinction of infection propagation comes about. We here report on a…

Populations and Evolution · Quantitative Biology 2015-02-18 Jose A. Cuesta , Jacobo Aguirre , Jose A. Capitan , Susanna C. Manrubia