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A GPU-accelerated version of the lattice Boltzmann method for efficient simulation of soft materials is introduced. Unlike standard approaches, this method reconstructs the distribution functions from available hydrodynamic variables…

We derive a mesoscopic modeling and simulation technique that is very close to the technique known as dissipative particle dynamics. The model is derived from molecular dynamics by means of a systematic coarse-graining procedure. Thus the…

Soft Condensed Matter · Physics 2009-10-31 Eirik G. Flekkoy , Peter V. Coveney , Gianni De Fabritiis

Rigid body interactions are fundamental to numerous scientific disciplines, but remain challenging to simulate due to their abrupt nonlinear nature and sensitivity to complex, often unknown environmental factors. These challenges call for…

Machine Learning · Computer Science 2025-07-28 Amaury Wei , Olga Fink

Change detection and irregular object extraction in 3D point clouds is a challenging task that is of high importance not only for autonomous navigation but also for updating existing digital twin models of various industrial environments.…

Computer Vision and Pattern Recognition · Computer Science 2023-12-18 Nikolaos Stathoulopoulos , Anton Koval , George Nikolakopoulos

Probing the structure of complex astrophysical objects requires effective three-dimensional (3D) numerical simulation of the relevant radiative transfer (RT) processes. As with any numerical simulation code, the choice of an appropriate…

Instrumentation and Methods for Astrophysics · Physics 2015-06-17 Peter Camps , Maarten Baes , Waad Saftly

Understanding the structural dynamics of many-particle glassy systems remains a key challenge in statistical physics. Over the last decade, glassy dynamics has also been reported in biological tissues, but is far from being understood. It…

Soft Condensed Matter · Physics 2024-09-30 Chengling Li , Matthias Merkel , Daniel M. Sussman

We present results from extensive simulations of driven vortex lattices interacting with periodic arrays of pinning sites. Changing an applied driving force produces a rich variety of novel dynamical plastic flow phases which are very…

Superconductivity · Physics 2009-10-30 C. Reichhardt , C. J. Olson , Franco Nori

Dynamic graphs refer to graphs whose structure dynamically changes over time. Despite the benefits of learning vertex representations (i.e., embeddings) for dynamic graphs, existing works merely view a dynamic graph as a sequence of changes…

Machine Learning · Computer Science 2023-11-02 Yu Yang , Hongzhi Yin , Jiannong Cao , Tong Chen , Quoc Viet Hung Nguyen , Xiaofang Zhou , Lei Chen

Topology change is a challenging problem for 4D reconstruction of dynamic scenes. In the classic volumetric fusion-based framework, a mesh is usually extracted from the TSDF volume as the canonical surface representation to help estimating…

Computer Vision and Pattern Recognition · Computer Science 2020-07-15 Chao Li , Xiaohu Guo

The Liquid Argon Time Projection Chamber (LArTPC) technology is widely used in high energy physics experiments, including the upcoming Deep Underground Neutrino Experiment (DUNE). Accurately simulating LArTPC detector responses is essential…

Instrumentation and Detectors · Physics 2023-03-01 Zhihua Dong , Kyle Knoepfel , Meifeng Lin , Brett Viren , Haiwang Yu

Topological event detection allows for the distributed computation of homology by focusing on local changes occurring in a network over time. In this paper, a model for the monitoring of topological events in dynamically changing regions…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-01-15 Vincent Knapps , Karl-Heinz Zimmermann

Advances in imaging techniques enable high resolution 3D visualisation of vascular networks over time and reveal abnormal structural features such as twists and loops, and their quantification is an active area of research. Here we showcase…

We fully generalize a previously-developed computational geometry tool [1] to perform large-scale simulations of arbitrary two-dimensional faceted surfaces $z = h(x,y)$. Our method uses a three-component facet/edge/junction storage model,…

Mathematical Physics · Physics 2011-10-17 Scott A. Norris , Stephen J. Watson

Fast 3D data analysis and steering of a tomographic experiment by changing environmental conditions or acquisition parameters require fast, close to real-time, 3D reconstruction of large data volumes. Here we present a performance-optimized…

Data Analysis, Statistics and Probability · Physics 2022-11-10 Viktor Nikitin

In this paper, we present a novel experimental approach for simulating and detecting topological invariants using ultracold fermions confined in two-dimensional hexagonal optical lattices. We propose achieving two-fold degenerate four-band…

Quantum Gases · Physics 2024-07-12 Jing-Xin Liu , Jian-Te Wang , Hai-Tao Ding

This paper considers the problem of detecting topology variations in dynamical networks. We consider a network whose behavior can be represented via a linear dynamical system. The problem of interest is then that of finding conditions under…

Systems and Control · Computer Science 2015-04-17 G. Battistelli , P. Tesi

We have developed several autotuning benchmarks in CUDA that take into account performance-relevant source-code parameters and reach near peak-performance on various GPU architectures. We have used them during the development and evaluation…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-02-11 Jiří Filipovič , Jana Hozzová , Amin Nezarat , Jaroslav Oľha , Filip Petrovič

Phenomenological (P-type) bifurcations are qualitative changes in stochastic dynamical systems whereby the stationary probability density function (PDF) changes its topology. The current state of the art for detecting these bifurcations…

Algebraic Topology · Mathematics 2024-06-10 Sunia Tanweer , Firas A. Khasawneh

We present a new particle-merging algorithm for the particle-in-cell method. Based on the concept of the Voronoi diagram, the algorithm partitions the phase space into smaller subsets, which consist of only particles that are in close…

Computational Physics · Physics 2016-04-20 Phuc T. Luu , T. Tückmantel , A. Pukhov

Updating an abstract Voronoi diagram after deletion of one site in linear time has been a well-known open problem; similarly, for concrete Voronoi diagrams of non-point sites. In this paper, we present an expected linear-time algorithm to…

Computational Geometry · Computer Science 2021-01-01 Kolja Junginger , Evanthia Papadopoulou