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In many fields, researchers are interested in large and complex biological processes. Two important examples are gene expression and DNA methylation in genetics. One key problem is to identify aberrant patterns of these processes and…

Applications · Statistics 2012-10-03 Matthias Kormaksson , James G. Booth , Maria E. Figueroa , Ari Melnick

Current deep learning-based approaches for the segmentation of microscopy images heavily rely on large amount of training data with dense annotation, which is highly costly and laborious in practice. Compared to full annotation where the…

Computer Vision and Pattern Recognition · Computer Science 2023-12-11 Shijie Li , Mengwei Ren , Thomas Ach , Guido Gerig

Grapevine winter pruning is a complex task, that requires skilled workers to execute it correctly. The complexity of this task is also the reason why it is time consuming. Considering that this operation takes about 80-120 hours/ha to be…

Computer Vision and Pattern Recognition · Computer Science 2021-06-09 Miguel Fernandes , Antonello Scaldaferri , Giuseppe Fiameni , Tao Teng , Matteo Gatti , Stefano Poni , Claudio Semini , Darwin Caldwell , Fei Chen

The non-uniform photoelectric response of infrared imaging systems results in fixed-pattern stripe noise being superimposed on infrared images, which severely reduces image quality. As the applications of degraded infrared images are…

Image and Video Processing · Electrical Eng. & Systems 2022-09-30 Zeshan Fayyaz , Daniel Platnick , Hannan Fayyaz , Nariman Farsad

MicroRNAs (miRNAs) are endogenous small non-coding RNAs that play an important role in post-transcriptional gene regulation. However, the experimental determination of miRNA sequence and structure is both expensive and time-consuming.…

Genomics · Quantitative Biology 2021-06-30 Shyaman Jayasundara , Sandali Lokuge , Puwasuru Ihalagedara , Damayanthi Herath

Analyzing CT scans, MRIs and X-rays is pivotal in diagnosing and treating diseases. However, detecting and identifying abnormalities from such medical images is a time-intensive process that requires expert analysis and is prone to…

Image and Video Processing · Electrical Eng. & Systems 2025-03-14 Daniel Syomichev , Padmini Gopinath , Guang-Lin Wei , Eric Chang , Ian Gordon , Amanuel Seifu , Rahul Pemmaraju , Neehar Peri , James Purtilo

We present an analytical scheme for designing metagrating-enhanced sparse antenna arrays. Unlike previous work, the proposed method does not involve time-consuming cost function optimizations, complex structural manipulations on the active…

Applied Physics · Physics 2023-02-01 Yaniv Kerzhner , Ariel Epstein

Training supervised deep neural networks that perform defect detection and segmentation requires large-scale fully-annotated datasets, which can be hard or even impossible to obtain in industrial environments. Generative AI offers…

Computer Vision and Pattern Recognition · Computer Science 2024-01-09 Gabriele Valvano , Antonino Agostino , Giovanni De Magistris , Antonino Graziano , Giacomo Veneri

Image processing is an important research area in computer vision. Image segmentation plays the vital rule in image processing research. There exist so many methods for image segmentation. Clustering is an unsupervised study. Clustering can…

Computer Vision and Pattern Recognition · Computer Science 2014-07-31 Dibya Jyoti Bora , Anil Kumar Gupta

The performance of spectral clustering heavily relies on the quality of affinity matrix. A variety of affinity-matrix-construction (AMC) methods have been proposed but they have hyperparameters to determine beforehand, which requires strong…

Machine Learning · Computer Science 2023-02-07 Jicong Fan , Yiheng Tu , Zhao Zhang , Mingbo Zhao , Haijun Zhang

Deep learning has become an extremely effective tool for image classification and image restoration problems. Here, we apply deep learning to microscopy, and demonstrate how neural networks can exploit the chromatic dependence of the…

Optics · Physics 2018-07-05 Eran Hershko* , Lucien E. Weiss* , Tomer Michaeli , Yoav Shechtman

This paper presents a new synthesis-based approach for batch image processing. Unlike existing tools that can only apply global edits to the entire image, our method can apply fine-grained edits to individual objects within the image. For…

Programming Languages · Computer Science 2023-06-16 Celeste Barnaby , Qiaochu Chen , Roopsha Samanta , Isil Dillig

Automated segmentation of individual leaves of a plant in an image is a prerequisite to measure more complex phenotypic traits in high-throughput phenotyping. Applying state-of-the-art machine learning approaches to tackle leaf instance…

Computer Vision and Pattern Recognition · Computer Science 2019-03-25 Daniel Ward , Peyman Moghadam , Nicolas Hudson

Multi-organ segmentation of X-ray images is of fundamental importance for computer aided diagnosis systems. However, the most advanced semantic segmentation methods rely on deep learning and require a huge amount of labeled images, which…

Image and Video Processing · Electrical Eng. & Systems 2021-11-19 Giorgio Ciano , Paolo Andreini , Tommaso Mazzierli , Monica Bianchini , Franco Scarselli

Image stitching is typically decomposed into three phases: registration, which aligns the source images with a common target image; seam finding, which determines for each target pixel the source image it should come from; and blending,…

Computer Vision and Pattern Recognition · Computer Science 2020-11-25 Charles Herrmann , Chen Wang , Richard Strong Bowen , Emil Keyder , Ramin Zabih

Accurately assessing tumor removal is paramount in the management of glioblastoma. We developed a pipeline using MRI scans and neural networks to segment tumor subregions and the surgical cavity in postoperative images. Our model excels in…

The general method of graph coarsening or graph reduction has been a remarkably useful and ubiquitous tool in scientific computing and it is now just starting to have a similar impact in machine learning. The goal of this paper is to take a…

Machine Learning · Computer Science 2021-06-23 Jie Chen , Yousef Saad , Zechen Zhang

The emergence of advanced AI-based tools to generate realistic images poses significant challenges for forensic detection and source attribution, especially as new generative techniques appear rapidly. Traditional methods often fail to…

Computer Vision and Pattern Recognition · Computer Science 2025-03-28 Tai D. Nguyen , Aref Azizpour , Matthew C. Stamm

A method is described where the aminoacyl-tRNA synthetase system is used to create very small devices for quantitative analysis of the amino acids that occur in proteins. The basis of the method is that each of the 20 synthetases and/or a…

Biological Physics · Physics 2007-05-23 Edward Shipwash

It is well known that correlations in microarray data represent a serious nuisance deteriorating the performance of gene selection procedures. This paper is intended to demonstrate that the correlation structure of microarray data provides…

Applications · Statistics 2007-12-18 Lev Klebanov , Andrei Yakovlev
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