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In this paper, we have studied, within a discrete WLC model, the spatial constraints in magnetic tweezers used in single molecule experiments. Two elements are involved: first, the fixed plastic slab on which is stuck the initial strand,…

Biomolecules · Quantitative Biology 2009-11-13 C. Bouchiat

In recent years, there has been considerable interest in understanding the motion in Hamiltonian systems when phase space is divided into stochastic and integrable regions. This paper studies one aspect of this problem, namely, the motion…

Chaotic Dynamics · Physics 2007-05-23 Charles F. F. Karney

Bubbles play an important role in the transport of chemicals and nutrients in many natural and industrial flows. Their dispersion is crucial to understand the mixing processes in these flows. Here we report on the dispersion of millimetric…

Fluid Dynamics · Physics 2018-08-08 Varghese Mathai , Sander G. Huisman , Chao Sun , Detlef Lohse , Mickaël Bourgoin

We study consequences of long-range elasticity in thermally assisted dynamics of yield stress materials. Within a two-dimensinal mesoscopic model we calculate the mean-square displacement and the dynamical structure factor for tracer…

Soft Condensed Matter · Physics 2014-12-09 Ezequiel E. Ferrero , Kirsten Martens , Jean-Louis Barrat

We adopt a stochastic approach to study the charge transport in transistors. In this approach, the hole and electron densities are ruled by diffusion-reaction stochastic partial differential equations satisfying local detailed balance…

Statistical Mechanics · Physics 2025-06-17 Jiayin Gu

The properties of a particle diffusing on a one-dimensional lattice where at each site a random barrier and a random trap act simultaneously on the particle are investigated by numerical and analytical techniques. The combined effect of…

Condensed Matter · Physics 2009-10-28 Achille Giacometti , K. P. N. Murthy

Diffusion in cell biology is important and complicated. Diffusing particles must contend with a complex environment as they make their way through the cell. We analyze a particular type of complexity that arises when diffusing particles…

Subcellular Processes · Quantitative Biology 2018-09-06 Ben Fogelson , James P. Keener

Supersonic turbulence occurs in many environments, particularly in astrophysics. In the crucial case of isothermal turbulence, the probability density function (PDF) of the logarithmic density, $s$, is well measured, but a theoretical…

Astrophysics of Galaxies · Physics 2024-10-31 Evan Scannapieco , Liubin Pan , Edward Buie , Marcus Brüggen

The behavior of particles driven through a narrow constriction is investigated in experiment and simulation. The system of particles adapts to the confining potentials and the interaction energies by a self-consistent arrangement of the…

Soft Condensed Matter · Physics 2008-10-15 P. Henseler , A. Erbe , M. Köppl , P. Leiderer , P. Nielaba

We derive equations of motion for the mean-squared displacement (MSD) of an active Brownian particle (ABP) in a crowded environment modeled by a dense system of passive Brownian particles, and of a passive tracer particle in a dense…

Soft Condensed Matter · Physics 2021-07-27 Julian Reichert , Thomas Voigtmann

We study the temperature dependence of static and dynamic responses of Coulomb interacting particles in two-dimensional traps across the thermal crossover from an amorphous solid- to liquid-like behaviors. While static correlations, that…

Disordered Systems and Neural Networks · Physics 2017-10-11 Biswarup Ash , J. Chakrabarti , Amit Ghosal

We characterize the super-diffusive dynamics of tracer particles in an electrohydrodynamically driven emulsion of oil droplets in an immiscible oil medium, where the amplitude and frequency of an external electric field are the control…

Applied Physics · Physics 2018-08-15 Somayeh Khajehpour Tadavani , Anand Yethiraj

We study a system of hard-core particles sliding downwards on a fluctuating one-dimensional surface which is characterized by a dynamical exponent $z$. In numerical simulations, an initially random particle density is found to coarsen and…

Statistical Mechanics · Physics 2009-10-31 Dibyendu Das , Mustansir Barma

The dynamics of self-locomotion of active particles in aligned or liquid crystalline fluids strongly deviates from that in simple isotropic media. We explore the long-time dynamics of a swimmer moving in a three-dimensional smectic liquid…

Soft Condensed Matter · Physics 2018-08-01 Claudia Ferreiro-Córdova , John Toner , Hartmut Löwen , Henricus H. Wensink

We show how the tracer motion of tagged, distinguishable particles can effectively describe transport in various homogeneous quantum many-body systems with constraints. We consider systems of spinful particles on a one-dimensional lattice…

Strongly Correlated Electrons · Physics 2022-10-20 Johannes Feldmeier , William Witczak-Krempa , Michael Knap

Based on a coarse-grained model, we carry out molecular dynamics simulations to analyze the diffusion of a small tracer particle inside a cylindrical channel whose inner wall is covered with randomly grafted short polymeric chains. We…

Soft Condensed Matter · Physics 2013-06-20 Rajarshi Chakrabarti , Stefan Kesselheim , Peter Kosovan , Christian Holm

In the simplest model of single-file diffusion, $N$ point particles wander on a segment of the $x$ axis of length $L$, with hard core interactions, which prevent passing, and with overdamped Brownian dynamics, $\lambda\dot{x}=\eta(t)$,…

Statistical Mechanics · Physics 2019-10-23 Theodore W. Burkhardt

The paper addresses the single-file diffusion in the presence of an absorbing boundary. The emphasis is on an interplay between the hard-core interparticle interaction and the absorption process. The resulting dynamics exhibits several…

Statistical Mechanics · Physics 2014-02-26 Artem Ryabov , Petr Chvosta

We calculate the diffusion coefficient of an active tracer in a schematic crowded environment, represented as a lattice gas of passive particles with hardcore interactions. Starting from the master equation of the problem, we put forward a…

Statistical Mechanics · Physics 2022-02-02 Pierre Rizkallah , Alessandro Sarracino , Olivier Bénichou , Pierre Illien

We perform Discrete Element Method (DEM) simulations of granular particles (polystyrene spheres) vibrated inside a cubic container. The study investigates the evolution of the packing fraction with and without rotational friction at…

Soft Condensed Matter · Physics 2026-03-03 Linnea Heitmeier , Jan Gabriel