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Population structure affects the outcome of natural selection. Static population structures can be described by graphs, where individuals occupy the nodes, and interactions occur along the edges. General conditions for evolutionary success…

Populations and Evolution · Quantitative Biology 2020-01-08 Benjamin Allen , Gabor Lippner , Martin A. Nowak

The relations, rather than the elements, constitute the structure of networks. We therefore develop a systematic approach to the analysis of networks, modelled as graphs or hypergraphs, that is based on structural properties of…

Discrete Mathematics · Computer Science 2020-12-08 Marzieh Eidi , Amirhossein Farzam , Wilmer Leal , Areejit Samal , Jürgen Jost

Graph classification plays an important role is data mining, and various methods have been developed recently for classifying graphs. In this paper, we propose a novel method for graph classification that is based on homotopy equivalence of…

Discrete Mathematics · Computer Science 2017-07-18 Alexander V. Evako

Temporal graphs are a class of graphs defined by a constant set of vertices and a changing set of edges, each of which is known as a timestep. These graphs are well motivated in modelling real-world networks, where connections may change…

Data Structures and Algorithms · Computer Science 2025-05-21 Duncan Adamson

Graphs can have different properties that lead to several graph types and may allow for a varying representation of diverse information. In order to clarify the modeling power of graphs, we introduce a partial order on the most common graph…

Discrete Mathematics · Computer Science 2022-09-08 Josephine M. Thomas , Silvia Beddar-Wiesing , Alice Moallemy-Oureh , Rüdiger Nather

A temporal graph is a graph in which edges are assigned a time label. Two nodes u and v of a temporal graph are connected one to the other if there exists a path from u to v with increasing edge time labels. We consider the problem of…

Data Structures and Algorithms · Computer Science 2023-04-04 Alkida Balliu , Filippo Brunelli , Pierluigi Crescenzi , Dennis Olivetti , Laurent Viennot

Let $G$ be a group. The power graph of $G$ is a graph with vertex set $G$ in which two distinct elements $x,y$ are adjacent if one of them is a power of the other. We characterize all groups whose power graphs have finite independence…

Combinatorics · Mathematics 2019-10-16 P. J. Cameron , S. H. Jafari

We live in a world increasingly dominated by networks -- communications, social, information, biological etc. A central attribute of many of these networks is that they are dynamic, that is, they exhibit structural changes over time. While…

Networking and Internet Architecture · Computer Science 2010-12-02 Prithwish Basu , Amotz Bar-Noy , Ram Ramanathan , Matthew P. Johnson

Graph is a fundamental mathematical structure in characterizing relations between different objects and has been widely used on various learning tasks. Most methods implicitly assume a given graph to be accurate and complete. However, real…

Machine Learning · Computer Science 2024-03-07 Xuanting Xie , Zhao Kang , Wenyu Chen

Graphs are ubiquitous data structures for representing interactions between entities. With an emphasis on the use of graphs to represent chemical molecules, we explore the task of learning to generate graphs that conform to a distribution…

Machine Learning · Computer Science 2019-03-08 Qi Liu , Miltiadis Allamanis , Marc Brockschmidt , Alexander L. Gaunt

In this paper, we introduce the notion of an energy graph as a simple, directed and vertex labeled graph $G$ such that the arcs $(v_i, v_j) \notin A(G)$ if $i > j$ for all distinct pairs $v_i,v_j$ and at least one vertex $v_k$ exists such…

General Mathematics · Mathematics 2016-10-13 Johan Kok , N. K. Sudev , K. P. Chithra , U. Mary

We propose a generic framework to describe classical Ising-like models defined on arbitrary graphs. The energy spectrum is shown to be the Hadamard transform of a suitably defined sparse "coding" vector associated with the graph. We expect…

Statistical Mechanics · Physics 2015-01-28 Rémy Mosseri

For a simple graph $G=(V,E)$ with eigenvalues of the adjacency matrix $\lambda_{1}\geq\lambda_{2}\geq\cdots\geq\lambda_{n}$, the energy of the graph is defined by $E(G)=\sum_{j=1}^{n}|\lambda_{j}|$. Myriads of papers have been published in…

Combinatorics · Mathematics 2017-04-05 Ernesto Estrada , Michele Benzi

It has been recently proposed that the natural connectivity can be used to characterize efficiently the robustness of complex networks. The natural connectivity quantifies the redundancy of alternative routes in the network by evaluating…

Statistical Mechanics · Physics 2009-12-19 Jun Wu , Mauricio Barahona , Yuejin Tan , Hongzhong Deng

Dynamically changing graphs are used in many applications of graph algorithms. The scope of these graphs are in graphics, communication networks and in VLSI designs where graphs are subjected to change, such as addition and deletion of…

Data Structures and Algorithms · Computer Science 2012-10-01 Megha Tyagi , Deepak Garg

The modeling of the elastic properties of granular or nanoscale systems requires the foundations of the theory of elasticity to be revisited, as one explores scales at which this theory may no longer hold. The only cases for which a…

Statistical Mechanics · Physics 2007-05-23 I. Goldhirsch , C. Goldenberg

Twisted diagrams are "diagrams" with components in different categories. Structure maps are defined using auxiliary data which consists of functors relating the various categories to each other. Prime examples of the construction are…

Algebraic Topology · Mathematics 2008-05-28 Thomas Huettemann , Oliver Roendigs

We describe the structure of connected graphs with the minimum and maximum average distance, radius, diameter, betweenness centrality, efficiency and resistance distance, given their order and size. We find tight bounds on these graph…

Molecular Networks · Quantitative Biology 2011-05-02 Dionysios Barmpoutis , Richard M. Murray

The interaction between waves and evolving media challenges traditional conservation laws. We experimentally investigate the behavior of elastic wave packets crossing a moving interface that separates two media with distinct propagation…

Classical Physics · Physics 2025-01-07 Alexandre Delory , Claire Prada , Maxime Lanoy , Antonin Eddi , Mathias Fink , Fabrice Lemoult

Inspired by artistic practices such as beadwork and himmeli, we study the problem of threading a single string through a set of tubes, so that pulling the string forms a desired graph. More precisely, given a connected graph (where edges…

Data Structures and Algorithms · Computer Science 2024-05-29 Erik D. Demaine , Yael Kirkpatrick , Rebecca Lin
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