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Principal Component analysis (PCA) is a useful statistical technique that is commonly used for multivariate analysis of correlated variables. It is usually applied as a dimension reduction method: the top principal components (PCs)…

Motivation: Genome-wide association studies (GWAS) have identified many loci implicated in disease susceptibility. Integration of GWAS summary statistics (p values) and functional genomic datasets should help to elucidate mechanisms.…

Genomics · Quantitative Biology 2014-10-17 Oliver S Burren , Hui Guo , Chris Wallace

The vast majority of connections between complex disease and common genetic variants were identified through meta-analysis, a powerful approach that enables large samples sizes while protecting against common artifacts due to population…

In the search for genetic factors that are associated with complex heritable human traits, considerable attention is now being focused on rare variants that individually have small effects. In response, numerous recent papers have proposed…

Methodology · Statistics 2014-09-10 Andriy Derkach , Jerry F. Lawless , Lei Sun

Genome-wide association studies (GWAS) offer new opportunities to identify genetic risk factors for Alzheimer's disease (AD). Recently, collaborative efforts across different institutions emerged that enhance the power of many existing…

Machine Learning · Computer Science 2016-08-26 Qingyang Li , Tao Yang , Liang Zhan , Derrek Paul Hibar , Neda Jahanshad , Yalin Wang , Jieping Ye , Paul M. Thompson , Jie Wang

Joint analysis of multiple phenotypes can increase statistical power in genetic association studies. Principal component analysis, as a popular dimension reduction method, especially when the number of phenotypes is high-dimensional, has…

Applications · Statistics 2018-06-18 Zhonghua Liu , Xihong Lin

Genomics is the foundation of precision medicine, global food security and virus surveillance. Exact-match is one of the most essential operations widely used in almost every step of genomics such as alignment, assembly, annotation, and…

Hardware Architecture · Computer Science 2021-01-15 Lei Jiang , Farzaneh Zokaee

Transformers are state-of-the-art models for a variety of sequence modeling tasks. At their core is an attention function which models pairwise interactions between the inputs at every timestep. While attention is powerful, it does not…

Computation and Language · Computer Science 2021-03-23 Hao Peng , Nikolaos Pappas , Dani Yogatama , Roy Schwartz , Noah A. Smith , Lingpeng Kong

Genome-wide association studies (GWAS) have achieved great success in the genetic study of Alzheimer's disease (AD). Collaborative imaging genetics studies across different research institutions show the effectiveness of detecting genetic…

Machine Learning · Computer Science 2017-04-28 Qingyang Li , Dajiang Zhu , Jie Zhang , Derrek Paul Hibar , Neda Jahanshad , Yalin Wang , Jieping Ye , Paul M. Thompson , Jie Wang

To transfer knowledge from seen attribute-object compositions to recognize unseen ones, recent compositional zero-shot learning (CZSL) methods mainly discuss the optimal classification branches to identify the elements, leading to the…

Computer Vision and Pattern Recognition · Computer Science 2024-09-02 Fengyuan Dai , Siteng Huang , Min Zhang , Biao Gong , Donglin Wang

Change detection has been a hotspot in remote sensing technology for a long time. With the increasing availability of multi-temporal remote sensing images, numerous change detection algorithms have been proposed. Among these methods, image…

Computer Vision and Pattern Recognition · Computer Science 2019-09-06 Bo Du , Lixiang Ru , Chen Wu , Liangpei Zhang

The development of next generation sequencing (NGS) technology and genotype imputation methods enabled researchers to measure both common and rare variants in genome-wide association studies (GWAS). Statistical methods have been proposed to…

Methodology · Statistics 2018-12-14 XIaoyu Cai , Lo-Bin Chang , Chi Song

The scarcity of annotated data, particularly for rare diseases, limits the variability of training data and the range of detectable lesions, presenting a significant challenge for supervised anomaly detection in medical imaging. To solve…

Computer Vision and Pattern Recognition · Computer Science 2023-08-30 Yiming Huang , Guole Liu , Yaoru Luo , Ge Yang

Taking advantages of high-throughput genotyping technology of single nucleotide polymorphism (SNP), large genome-wide association studies (GWASs) have been considered as the promise to unravel the complex relationships between genotypes and…

Genomics · Quantitative Biology 2018-11-20 Xuan Guo

We introduce a fast Self-adapting Forward-Forward Network (SaFF-Net) for medical imaging analysis, mitigating power consumption and resource limitations, which currently primarily stem from the prevalent reliance on back-propagation for…

Computer Vision and Pattern Recognition · Computer Science 2024-07-18 Johanna P. Müller , Bernhard Kainz

Confirmatory factor analysis (CFA) is a statistical method for identifying and confirming the presence of latent factors among observed variables through the analysis of their covariance structure. Compared to alternative factor models, CFA…

Methodology · Statistics 2024-10-08 Yifan Yang , Tianzhou Ma , Chuan Bi , Shuo Chen

Compressed sensing MRI is a classic inverse problem in the field of computational imaging, accelerating the MR imaging by measuring less k-space data. The deep neural network models provide the stronger representation ability and faster…

Computer Vision and Pattern Recognition · Computer Science 2018-04-05 Zhiwen Fan , Liyan Sun , Xinghao Ding , Yue Huang , Congbo Cai , John Paisley

We propose the use of the Distributional Zeta-Function (DZF) for constructing a new set of Systemic Performance Measures (SPM). SPM have been proposed to investigate network synthesis problems such as the growing of linear consensus…

Statistical Mechanics · Physics 2020-07-07 C. D. Rodríguez-Camargo , A. F. Urquijo-Rodríguez , E. A. Mojica-Nava

A reinforcement learning-enhanced genetic algorithm (RLGA) is proposed for wind farm layout optimization (WFLO) problems. While genetic algorithms (GAs) are among the most effective and accessible methods for WFLO, their performance and…

Neural and Evolutionary Computing · Computer Science 2024-12-11 Guodan Dong , Jianhua Qin , Chutian Wu , Chang Xu , Xiaolei Yang

Rapid and accessible cardiac biomarker testing is essential for the timely diagnosis and risk assessment of myocardial infarction (MI) and heart failure (HF), two interrelated conditions that frequently coexist and drive recurrent…