Related papers: Learning for Biomedical Information Extraction: Me…

Constructing large-scaled medical knowledge graphs can significantly boost healthcare applications for medical surveillance, bring much attention from recent research. An essential step in constructing large-scale MKG is extracting…

Biomedical information is growing rapidly in the recent years and retrieving useful data through information extraction system is getting more attention. In the current research, we focus on different aspects of relation extraction…

Open Information Extraction (OpenIE) facilitates domain-independent discovery of relational facts from large corpora. The technique well suits many open-world natural language understanding scenarios, such as automatic knowledge base…

Biomedical Information Extraction is an exciting field at the crossroads of Natural Language Processing, Biology and Medicine. It encompasses a variety of different tasks that require application of state-of-the-art NLP techniques, such as…

Overall, the two main contributions of this work include the application of sentence simplification to association extraction as described above, and the use of distributional semantics for concept extraction. The proposed work on concept…

Open Information Extraction (OIE) is the task of the unsupervised creation of structured information from text. OIE is often used as a starting point for a number of downstream tasks including knowledge base construction, relation…

We introduce a biomedical information extraction (IE) pipeline that extracts biological relationships from text and demonstrate that its components, such as named entity recognition (NER) and relation extraction (RE), outperform…

Many of the current scientific advances in the life sciences have their origin in the intensive use of data for knowledge discovery. In no area this is so clear as in bioinformatics, led by technological breakthroughs in data acquisition…

Open information extraction (IE) is the task of extracting open-domain assertions from natural language sentences. A key step in open IE is confidence modeling, ranking the extractions based on their estimated quality to adjust precision…

Current research on the advantages and trade-offs of using characters, instead of tokenized text, as input for deep learning models, has evolved substantially. New token-free models remove the traditional tokenization step; however, their…

This report argues that, even in the simplest cases, IE is an ontology-driven process. It is not a mere text filtering method based on simple pattern matching and keywords, because the extracted pieces of texts are interpreted with respect…

Information Extraction (IE) from scientific texts can be used to guide readers to the central information in scientific documents. But narrow IE systems extract only a fraction of the information captured, and Open IE systems do not perform…

Open Information Extraction (OpenIE) represents a crucial NLP task aimed at deriving structured information from unstructured text, unrestricted by relation type or domain. This survey paper provides an overview of OpenIE technologies…

Question Answer (QA) systems for biomedical experiments facilitate cross-disciplinary communication, and serve as a foundation for downstream tasks, e.g., laboratory automation. High Information Density (HID) and Multi-Step Reasoning (MSR)…

This paper reports on modern approaches in Information Extraction (IE) and its two main sub-tasks of Named Entity Recognition (NER) and Relation Extraction (RE). Basic concepts and the most recent approaches in this area are reviewed, which…

Information Extraction (IE) from text refers to the task of extracting structured knowledge from unstructured text. The task typically consists of a series of sub-tasks such as Named Entity Recognition and Relation Extraction. Sourcing…

We provide a detailed overview of the various approaches that were proposed to date to solve the task of Open Information Extraction. We present the major challenges that such systems face, show the evolution of the suggested approaches…

Information extraction (IE) aims to extract structural knowledge from plain natural language texts. Recently, generative Large Language Models (LLMs) have demonstrated remarkable capabilities in text understanding and generation. As a…

Objectives: Despite the recent adoption of large language models (LLMs) for biomedical information extraction, challenges in prompt engineering and algorithms persist, with no dedicated software available. To address this, we developed…

Information extraction (IE) aims to produce structured information from an input text, e.g., Named Entity Recognition and Relation Extraction. Various attempts have been proposed for IE via feature engineering or deep learning. However,…