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A novel implementation for the skeletal reduction of large detailed reaction mechanisms using the directed relation graph with error propagation and sensitivity analysis (DRGEPSA) is developed and presented with examples for three…

Chemical Physics · Physics 2016-07-19 Kyle E. Niemeyer , Chih-Jen Sung , Mandhapati P. Raju

Shortest path search is a core operation in graph-based applications, yet existing methods face important limitations. Classical algorithms such as Dijkstra's and A* become inefficient as graphs grow more complex, while index-based…

Machine Learning · Computer Science 2025-08-05 Tiantian Liu , Xiao Li , Huan Li , Hua Lu , Christian S. Jensen , Jianliang Xu

All traditional methods of computing shortest paths depend upon edge-relaxation where the cost of reaching a vertex from a source vertex is possibly decreased if that edge is used. We introduce a method which maintains lower bounds as well…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-12-31 Vijay K. Garg

In this paper we prove that Dijkstra's shortest-path algorithm, if implemented with a sufficiently efficient heap, is universally optimal in its running time, and with suitable small additions is also universally optimal in its number of…

Data Structures and Algorithms · Computer Science 2025-05-08 Bernhard Haeupler , Richard Hladík , Václav Rozhoň , Robert E. Tarjan , Jakub Tětek

Recently we submitted a paper, whose title is A New Fast Unweighted All-pairs Shortest Path Search Algorithm Based on Pruning by Shortest Path Trees, to arXiv. This is related to unweighted graphs. This paper also presents a new fast…

Data Structures and Algorithms · Computer Science 2019-08-20 Yasuo Yamane , Kenichi Kobayashi

Nearest neighbor search is a fundamental data structure problem with many applications in machine learning, computer vision, recommendation systems and other fields. Although the main objective of the data structure is to quickly report…

Data Structures and Algorithms · Computer Science 2025-02-20 Piyush Anand , Piotr Indyk , Ravishankar Krishnaswamy , Sepideh Mahabadi , Vikas C. Raykar , Kirankumar Shiragur , Haike Xu

Generic Dijkstra is a novel algorithm for finding the optimal shortest path in both wavelength-division multiplexed networks (WDM) and elastic optical networks (EON), claimed to outperform known algorithms considerably. Because of its…

Networking and Internet Architecture · Computer Science 2021-07-20 Piotr Jurkiewicz , Edyta Biernacka , Jerzy Domżał , Robert Wójcik

Dijkstra's algorithm for the Single-Source Shortest Path (SSSP) problem is notoriously hard to parallelize in $o(n)$ depth, $n$ being the number of vertices in the input graph, without increasing the required parallel work unreasonably.…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-05-09 Michael Kainer , Jesper Larsson Träff

Although Dijkstra's algorithm has near-optimal time complexity for the problem of finding a shortest path from a given vertex $s$ to a given vertex $t$, in practice other algorithms are often superior on huge graphs. A prominent example is…

Data Structures and Algorithms · Computer Science 2025-06-16 Bernhard Haeupler , Richard Hladík , Vaclav Rozhon , Robert E. Tarjan , Jakub Tětek

This paper describes the shortest path problem in weighted graphs and examines the differences in efficiency that occur when using Dijkstra's algorithm with a Fibonacci heap, binary heap, and self-balancing binary tree. Using C++…

Data Structures and Algorithms · Computer Science 2023-03-22 Rhyd Lewis

A central problem in machine learning and pattern recognition is the process of recognizing the most important features. In this paper, we provide a new feature selection method (DRPT) that consists of first removing the irrelevant features…

Machine Learning · Computer Science 2021-05-19 Majid Afshar , Hamid Usefi

Let G be a weighted (directed) graph with n vertices and m edges. Given a source vertex s, Dijkstra's algorithm computes the shortest path lengths from s to all other vertices in O(m + n log n) time. This bound is known to be worst-case…

Data Structures and Algorithms · Computer Science 2026-03-13 Ivor van der Hoog , Eva Rotenberg , Daniel Rutschmann

A modified version of the Dijkstra algorithm using an inventive contraction hierarchy is proposed. The algorithm considers a directed acyclic graph with a conical or semi-circular structure for which a pair of edges is chosen iteratively…

Data Structures and Algorithms · Computer Science 2015-03-20 Ugochi A. Okengwu , Enoch O. Nwachukwu , Emmanuel N. Osegi

The single-source shortest path problem is a classical problem in the research field of graph algorithm. In this paper, a new single-source shortest path algorithm for nonnegative weight graph is proposed. The algorithm can compress…

Data Structures and Algorithms · Computer Science 2015-10-16 Yunpeng Li

Depth-first search (DFS) is the basis for many efficient graph algorithms. We introduce general techniques for the efficient implementation of DFS-based graph algorithms and exemplify them on three algorithms for computing strongly…

Data Structures and Algorithms · Computer Science 2017-03-30 Kurt Mehlhorn , Stefan Näher , Peter Sanders

Graph theory is increasingly commonly utilised in genetics, proteomics and neuroimaging. In such fields, the data of interest generally constitute weighted graphs. Analysis of such weighted graphs often require the integration of…

Molecular Networks · Quantitative Biology 2011-06-09 Cedric E. Ginestet , Andrew Simmons

Using Dijkstra's algorithm to compute the shortest paths in a graph from a single source node to all other nodes is common practice in industry and academia. Although the original description of the algorithm advises using a Fibonacci Heap…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-05-20 Nimrod Aviram , Yuval Shavitt

We present the generic Dijkstra shortest path algorithm: an efficient algorithm for finding a shortest path in an optical network, both in a wavelength-division multiplexed network, and an elastic optical network (EON). The proposed…

Networking and Internet Architecture · Computer Science 2020-01-08 Ireneusz Szcześniak , Andrzej Jajszczyk , Bożena Woźna-Szcześniak

We present a new exact algorithm for the Steiner tree problem in edge-weighted graphs. Our algorithm improves the classical dynamic programming approach by Dreyfus and Wagner. We achieve a significantly better practical performance via…

Data Structures and Algorithms · Computer Science 2015-09-09 Stefan Hougardy , Jannik Silvanus , Jens Vygen

Efficient layout of large-scale graphs remains a challenging problem: the force-directed and dimensionality reduction-based methods suffer from high overhead for graph distance and gradient computation. In this paper, we present a new graph…

Social and Information Networks · Computer Science 2020-08-19 Minfeng Zhu , Wei Chen , Yuanzhe Hu , Yuxuan Hou , Liangjun Liu , Kaiyuan Zhang
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