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Semantic segmentation of electron microscopy (EM) images of biological samples remains a challenge in the life sciences. EM data captures details of biological structures, sometimes with such complexity that even human observers can find it…

Computer Vision and Pattern Recognition · Computer Science 2025-11-03 Sheida Rahnamai Kordasiabi , Damian Dalle Nogare , Florian Jug

This paper describes a novel approach of packing sparse convolutional neural networks for their efficient systolic array implementations. By combining subsets of columns in the original filter matrix associated with a convolutional layer,…

Machine Learning · Computer Science 2018-11-13 H. T. Kung , Bradley McDanel , Sai Qian Zhang

Live cell microscopy sequences exhibit complex spatial structures and complicated temporal behaviour, making their analysis a challenging task. Considering cell segmentation problem, which plays a significant role in the analysis, the…

Computer Vision and Pattern Recognition · Computer Science 2019-01-08 Assaf Arbelle , Tammy Riklin Raviv

System identification techniques -- projection pursuit regression models (PPRs) and convolutional neural networks (CNNs) -- provide state-of-the-art performance in predicting visual cortical neurons' responses to arbitrary input stimuli.…

Quantitative Methods · Quantitative Biology 2021-10-04 Ziniu Wu , Harold Rockwell , Yimeng Zhang , Shiming Tang , Tai Sing Lee

Ensembling a neural network is a widely recognized approach to enhance model performance, estimate uncertainty, and improve robustness in deep supervised learning. However, deep ensembles often come with high computational costs and memory…

Clustering has long been a popular unsupervised learning approach to identify groups of similar objects and discover patterns from unlabeled data in many applications. Yet, coming up with meaningful interpretations of the estimated clusters…

Methodology · Statistics 2020-05-26 Minjie Wang , Tianyi Yao , Genevera I. Allen

Ensemble of predictions is known to perform better than individual predictions taken separately. However, for tasks that require heavy computational resources, e.g. semantic segmentation, creating an ensemble of learners that needs to be…

Computer Vision and Pattern Recognition · Computer Science 2022-03-23 Walid Bousselham , Guillaume Thibault , Lucas Pagano , Archana Machireddy , Joe Gray , Young Hwan Chang , Xubo Song

Sparse model identification enables nonlinear dynamical system discovery from data. However, the control of false discoveries for sparse model identification is challenging, especially in the low-data and high-noise limit. In this paper, we…

Machine Learning · Computer Science 2023-04-28 L. Mars Gao , Urban Fasel , Steven L. Brunton , J. Nathan Kutz

Scribble annotations significantly reduce the cost and labor required for dense labeling in large medical datasets with complex anatomical structures. However, current scribble-supervised learning methods are limited in their ability to…

Computer Vision and Pattern Recognition · Computer Science 2025-03-04 Luyi Qiu , Tristan Till , Xiaobao Guo , Adams Wai-Kin Kong

An ensemble method that fuses the output decision vectors of multiple feedforward-designed convolutional neural networks (FF-CNNs) to solve the image classification problem is proposed in this work. To enhance the performance of the…

Computer Vision and Pattern Recognition · Computer Science 2019-01-09 Yueru Chen , Yijing Yang , Wei Wang , C. -C. Jay Kuo

We demonstrate that the information contained in the spike occurrence times of a population of neurons can be broken up into a series of terms, each of which reflect something about potential coding mechanisms. This is possible in the…

Biological Physics · Physics 2007-05-23 S. Panzeri , S. R. Schultz

Understanding neural networks is challenging in part because of the dense, continuous nature of their hidden states. We explore whether we can train neural networks to have hidden states that are sparse, discrete, and more interpretable by…

Machine Learning · Computer Science 2023-10-27 Alex Tamkin , Mohammad Taufeeque , Noah D. Goodman

Sparse dictionary coding represents signals as linear combinations of a few dictionary atoms. It has been applied to images, time series, graph signals and multi-way spatio-temporal data by jointly employing temporal and spatial…

Machine Learning · Computer Science 2025-09-15 Boya Ma , Abram Magner , Maxwell McNeil , Petko Bogdanov

The principles of neural encoding and computations are inherently collective and usually involve large populations of interacting neurons with highly correlated activities. While theories of neural function have long recognized the…

Neurons and Cognition · Quantitative Biology 2019-05-14 Christophe Gardella , Olivier Marre , Thierry Mora

State-of-the-art approaches toward image restoration can be classified into model-based and learning-based. The former - best represented by sparse coding techniques - strive to exploit intrinsic prior knowledge about the unknown…

Image and Video Processing · Electrical Eng. & Systems 2018-11-29 Fangfang Wu , Weisheng Dong , Guangming Shi , Xin Li

Part models of object categories are essential for challenging recognition tasks, where differences in categories are subtle and only reflected in appearances of small parts of the object. We present an approach that is able to learn part…

Computer Vision and Pattern Recognition · Computer Science 2015-12-08 Marcel Simon , Erik Rodner

Inference in deep neural networks can be computationally expensive, and networks capable of anytime inference are important in mscenarios where the amount of compute or quantity of input data varies over time. In such networks the inference…

Computer Vision and Pattern Recognition · Computer Science 2020-12-15 Adria Ruiz , Jakob Verbeek

This technical note considers the identification of nonlinear discrete-time systems with additive process noise but without measurement noise. In particular, we propose a method and its associated algorithm to identify the system nonlinear…

Optimization and Control · Mathematics 2015-04-27 Wei Pan , Ye Yuan , Jorge Gonçalves , Guy-Bart Stan

Understanding how information is represented in neural networks is a fundamental challenge in both neuroscience and artificial intelligence. Despite their nonlinear architectures, recent evidence suggests that neural networks encode…

Machine Learning · Computer Science 2025-03-04 David Klindt , Charles O'Neill , Patrik Reizinger , Harald Maurer , Nina Miolane

Ensemble learning has gain attention in resent deep learning research as a way to further boost the accuracy and generalizability of deep neural network (DNN) models. Recent ensemble training method explores different training algorithms or…

Machine Learning · Computer Science 2023-01-20 Jingchi Zhang , Huanrui Yang , Hai Li