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Graph embeddings have emerged as a powerful tool for representing complex network structures in a low-dimensional space, enabling the use of efficient methods that employ the metric structure in the embedding space as a proxy for the…

Social and Information Networks · Computer Science 2024-04-18 Radosław Nowak , Adam Małkowski , Daniel Cieślak , Piotr Sokół , Paweł Wawrzyński

Machine learning techniques have recently been adopted in various applications in medicine, biology, chemistry, and material engineering. An important task is to predict the properties of molecules, which serves as the main subroutine in…

Machine Learning · Computer Science 2019-11-12 Shengchao Liu , Mehmet Furkan Demirel , Yingyu Liang

Applications in High-Performance Computing (HPC) environments face challenges due to increasing complexity. Among them, the increasing usage of sparse data pushes the limits of data structures and programming models and hampers the…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-08-26 Alberto Scolari , Albert-Jan Yzelman

Call graphs depict the static, caller-callee relation between "functions" in a program. With most source/target languages supporting functions as the primitive unit of composition, call graphs naturally form the fundamental control flow…

Software Engineering · Computer Science 2016-11-17 Ganesh M. Narayan , K. Gopinath , V. Sridhar

I will present a way to implement graph algorithms which is different from traditional methods. This work was motivated by the belief that some ideas from software engineering should be applied to graph algorithms. Re-usability of software…

Data Structures and Algorithms · Computer Science 2010-03-24 Marco Nissen

Today's graphs used in domains such as machine learning or social network analysis may contain hundreds of billions of edges. Yet, they are not necessarily stored efficiently, and standard graph representations such as adjacency lists waste…

Data Structures and Algorithms · Computer Science 2020-11-02 Maciej Besta , Dimitri Stanojevic , Tijana Zivic , Jagpreet Singh , Maurice Hoerold , Torsten Hoefler

Hypergraphs are a generalization of graphs in which edges can connect any number of vertices. They allow the modeling of complex networks with higher-order interactions, and their spectral theory studies the qualitative properties that can…

Combinatorics · Mathematics 2021-12-01 Raffaella Mulas

Graphs are ubiquitous and ever-present data structures that have a wide range of applications involving social networks, knowledge bases and biological interactions. The evolution of a graph in such scenarios can yield important insights…

Data Structures and Algorithms · Computer Science 2019-02-15 Lefteris Zervakis , Vinay Setty , Christos Tryfonopoulos , Katja Hose

Machine Learning (ML) techniques are indispensable in a wide range of fields. Unfortunately, the exponential increase of dataset sizes are rapidly extending the runtime of sequential algorithms and threatening to slow future progress in ML.…

Machine Learning · Computer Science 2011-07-06 Yucheng Low , Joseph Gonzalez , Aapo Kyrola , Danny Bickson , Carlos Guestrin

Graph-based methods have been proposed as a unified framework for discrete calculus of local and nonlocal image processing methods in the recent years. In order to translate variational models and partial differential equations to a graph,…

Numerical Analysis · Mathematics 2018-12-10 Ronny Bergmann , Daniel Tenbrinck

A speculative overview of a future topic of research. The paper is a collection of ideas concerning two related areas: 1) Graph computation machines ("computing with graphs"). This is the class of models of computation in which the state of…

Neural and Evolutionary Computing · Computer Science 2007-05-23 Bayle Shanks

Graph neural networks (GNNs) are a class of deep models that operate on data with arbitrary topology represented as graphs. We introduce an efficient memory layer for GNNs that can jointly learn node representations and coarsen the graph.…

Machine Learning · Computer Science 2020-06-11 Amir Hosein Khasahmadi , Kaveh Hassani , Parsa Moradi , Leo Lee , Quaid Morris

Given an edge-coloring of a graph, the palette of a vertex is defined as the set of colors of the edges which are incident with it. We define the palette index of a graph as the minimum number of distinct palettes, taken over all…

Combinatorics · Mathematics 2021-07-09 Davide Mattiolo , Giuseppe Mazzuoccolo , Gloria Tabarelli

We report on implementing graph grammars for intelligence analysis in OCaml. Graph grammars are represented as elements of an algebraic data type in OCaml. In addition to algebraic data types, we use other concepts from functional…

Programming Languages · Computer Science 2016-06-06 Rod Moten , Kemafor Anyanwu-Ogan , Sahibi Miranshah

Particle physics is a branch of science aiming at discovering the fundamental laws of matter and forces. Graph neural networks are trainable functions which operate on graphs---sets of elements and their pairwise relations---and are a…

High Energy Physics - Experiment · Physics 2020-10-22 Jonathan Shlomi , Peter Battaglia , Jean-Roch Vlimant

The adoption of Large Language Models (LLMs) is rapidly expanding across various tasks that involve inherent graphical structures. Graphs are integral to a wide range of applications, including motion planning for autonomous vehicles,…

Artificial Intelligence · Computer Science 2025-03-17 Piyush Gupta , Sangjae Bae , David Isele

While graphs and abstract data structures can be large and complex, practical instances are often regular or highly structured. If the instance has sufficient structure, we might hope to compress the object into a more succinct…

Computational Complexity · Computer Science 2024-12-02 Shreya Gupta , Boyang Huang , Russell Impagliazzo , Stanley Woo , Christopher Ye

Spatial dependency and spatial embedding are basic physical properties of many phenomena modeled by networks. The most indicated computational environment to deal with spatial information is to use Georeferenced Information System (GIS) and…

Graphs serve as generic tools to encode the underlying relational structure of data. Often this graph is not given, and so the task of inferring it from nodal observations becomes important. Traditional approaches formulate a convex inverse…

Machine Learning · Computer Science 2024-06-24 Max Wasserman , Gonzalo Mateos

Graphs can model real-world, complex systems by representing entities and their interactions in terms of nodes and edges. To better exploit the graph structure, graph neural networks have been developed, which learn entity and edge…

Machine Learning · Computer Science 2022-06-06 Tong Liu , Yushan Liu , Marcel Hildebrandt , Mitchell Joblin , Hang Li , Volker Tresp