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We consider the problem of enumerating all minimal transversals (also called minimal hitting sets) of a hypergraph $\mathcal{H}$. An equivalent formulation of this problem known as the \emph{transversal hypergraph} problem (or…

Combinatorics · Mathematics 2026-02-02 Arnaud Mary

For a fixed finite collection of graphs ${\cal F}$, the ${\cal F}$-M-DELETION problem asks, given an $n$-vertex input graph $G,$ for the minimum number of vertices that intersect all minor models in $G$ of the graphs in ${\cal F}$. by…

Data Structures and Algorithms · Computer Science 2021-03-12 Julien Baste , Ignasi Sau , Dimitrios M. Thilikos

Tangles of graphs have been introduced by Robertson and Seymour in the context of their graph minor theory. Tangles may be viewed as describing "k-connected components" of a graph (though in a twisted way). They play an important role in…

Discrete Mathematics · Computer Science 2016-03-03 Martin Grohe , Pascal Schweitzer

Boolean-width is a recently introduced graph parameter. Many problems are fixed parameter tractable when parametrized by boolean-width, for instance "Minimum Weighted Dominating Set" (MWDS) problem can be solved in $O^*(2^{3k})$ time given…

Discrete Mathematics · Computer Science 2011-07-11 Rémy Belmonte , Martin Vatshelle

For a finite collection of graphs ${\cal F}$, the ${\cal F}$-M-DELETION (resp. ${\cal F}$-TM-DELETION) problem consists in, given a graph $G$ and an integer $k$, decide whether there exists $S \subseteq V(G)$ with $|S| \leq k$ such that $G…

Data Structures and Algorithms · Computer Science 2021-03-12 Julien Baste , Ignasi Sau , Dimitrios M. Thilikos

We develop a novel parallel decomposition strategy for unweighted, undirected graphs, based on growing disjoint connected clusters from batches of centers progressively selected from yet uncovered nodes. With respect to similar previous…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-02-09 Matteo Ceccarello , Andrea Pietracaprina , Geppino Pucci , Eli Upfal

The bidimensionality of a set of vertices $X$ in a graph $G$ is the maximum $k$ for which $G$ contains as a $X$-rooted minor the $(k \times k)$-grid. This notion allows for the following version of the Graph Minors Structure Theorem (GMST)…

Combinatorics · Mathematics 2026-05-27 Dimitrios M. Thilikos , Sebastian Wiederrecht

While most classical NP-hard graph problems cannot be solved in time $2^{o(n)}$ on general graphs under the Exponential Time Hypothesis (ETH), many exhibit the square-root phenomenon and admit optimal algorithms running in time…

Data Structures and Algorithms · Computer Science 2026-04-30 Malory Marin , Rémi Watrigant

We define and study the link prediction problem in bipartite networks, specializing general link prediction algorithms to the bipartite case. In a graph, a link prediction function of two vertices denotes the similarity or proximity of the…

Machine Learning · Computer Science 2010-07-27 Jérôme Kunegis , Ernesto W. De Luca , Sahin Albayrak

In this paper, we consider the problems of enumerating minimal vertex covers and minimal dominating sets with capacity and/or connectivity constraints. We develop polynomial-delay enumeration algorithms for these problems on bounded-degree…

Data Structures and Algorithms · Computer Science 2024-11-15 Yasuaki Kobayashi , Kazuhiro Kurita , Kevin Mann , Yasuko Matsui , Hirotaka Ono

Given a graph G = (V,E) and an integer k, an edge modification problem for a graph property P consists in deciding whether there exists a set of edges F of size at most k such that the graph H = (V,E \vartriangle F) satisfies the property…

Data Structures and Algorithms · Computer Science 2015-05-19 Sylvain Guillemot , Christophe Paul , Anthony Perez

Given a simple connected undirected graph G = (V, E), a set X \subseteq V(G), and integers k and p, STEINER SUBGRAPH EXTENSION problem asks if there exists a set S \supseteq X with at most k vertices such that G[S] is p-edge-connected. This…

Data Structures and Algorithms · Computer Science 2025-10-07 Eduard Eiben , Diptapriyo Majumdar , M. S. Ramanujan

In Two-Sets Cut-Uncut, we are given an undirected graph $G=(V,E)$ and two terminal sets $S$ and $T$. The task is to find a minimum cut $C$ in $G$ (if there is any) separating $S$ from $T$ under the following ``uncut'' condition. In the…

Data Structures and Algorithms · Computer Science 2024-08-27 Matthias Bentert , Fedor V. Fomin , Fanny Hauser , Saket Saurabh

Dual graphs have been applied to model RNA secondary structures with pseudoknots, or intertwined base pairs. In previous works, a linear-time algorithm was introduced to partition dual graphs into maximally connected components called…

Biomolecules · Quantitative Biology 2021-09-09 Louis Petingi

Enumerative kernelization is a recent and promising area sitting at the intersection of parameterized complexity and enumeration algorithms. Its study began with the paper of Creignou et al. [Theory Comput. Syst., 2017], and development in…

Data Structures and Algorithms · Computer Science 2025-09-11 Marin Bougeret , Guilherme C. M. Gomes , Vinicius F. dos Santos , Ignasi Sau

We extend the diffusion-map formalism to data sets that are induced by asymmetric kernels. Analytical convergence results of the resulting expansion are proved, and an algorithm is proposed to perform the dimensional reduction. In this work…

Machine Learning · Computer Science 2024-01-24 Alvaro Almeida Gomez , Antonio Silva Neto , Jorge zubelli

For a graph $G$, a subset $S\subseteq V(G)$ is called a resolving set of $G$ if, for any two vertices $u,v\in V(G)$, there exists a vertex $w\in S$ such that $d(w,u)\neq d(w,v)$. The Metric Dimension problem takes as input a graph $G$ on…

Data Structures and Algorithms · Computer Science 2025-03-18 Florent Foucaud , Esther Galby , Liana Khazaliya , Shaohua Li , Fionn Mc Inerney , Roohani Sharma , Prafullkumar Tale

In a (parameterized) graph edge modification problem, we are given a graph $G$, an integer $k$ and a (usually well-structured) class of graphs $\mathcal{G}$, and ask whether it is possible to transform $G$ into a graph $G' \in \mathcal{G}$…

Data Structures and Algorithms · Computer Science 2021-09-17 Gabriel Bathie , Nicolas Bousquet , Théo Pierron

We study the problem #IndSub(P) of counting all induced subgraphs of size k in a graph G that satisfy the property P. This problem was introduced by Jerrum and Meeks and shown to be #W[1]-hard when parameterized by k for some families of…

Computational Complexity · Computer Science 2019-04-25 Julian Dörfler , Marc Roth , Johannes Schmitt , Philip Wellnitz

We prove a duality theorem applicable to a a wide range of specialisations, as well as to some generalisations, of tangles in graphs. It generalises the classical tangle duality theorem of Robertson and Seymour, which says that every graph…

Combinatorics · Mathematics 2017-07-07 Reinhard Diestel , Philipp Eberenz , Joshua Erde