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In this research, we present a comprehensive, longitudinal empirical summary of the R package ecosystem, including not just CRAN, but also Bioconductor and GitHub. We analyze more than 25,000 packages, 150,000 releases, and 15 million files…

Mathematical Software · Computer Science 2021-02-22 Ethan Bommarito , Michael J Bommarito

Free and open source software package ecosystems have existed for a long time and are among the most sophisticated human-made systems. One of the oldest and most popular software package ecosystems is CRAN, the repository of packages of the…

Software Engineering · Computer Science 2020-07-16 Marçal Mora-Cantallops , Salvador Sánchez-Alonso , Elena García-Barriocanal

One of the most powerful features of R is its infrastructure for contributed code. The built-in package manager and complementary repositories provide a great system for development and exchange of code, and have played an important role in…

Software Engineering · Computer Science 2013-11-04 Jeroen Ooms

Nearly every popular programming language comes with one or more package managers. The software packages distributed by such package managers form large software ecosystems. These packaging ecosystems contain a large number of package…

Software Engineering · Computer Science 2017-10-16 Alexandre Decan , Tom Mens , Philippe Grosjean

This letter introduced a new R package 'coexist' which can perform species coexistence simulation and analysis. The package was initially developed for understanding the role of different combinations of varying species growth rates,…

Populations and Evolution · Quantitative Biology 2014-04-11 Youhua Chen

This article explores the role of unrecognised labour in corporate innovation systems via an analysis of researcher coding and discursive contributions to R, one of the largest statistical software ecosystems. Studies of online platforms…

Software Engineering · Computer Science 2025-12-23 Xiaolan Cai , Mathieu O'Neil , Stefano Zacchiroli

Using libraries in applications has helped developers reduce the costs of reinventing already existing code. However, an increase in diverse technology stacks and third-party library usage has led developers to inevitably switch…

Software Engineering · Computer Science 2023-03-17 Kanchanok Kannee , Raula Gaikovina Kula , Supatsara Wattanakriengkrai , Kenichi Matsumoto

GitHub provides developers with a practical way to distribute source code and collaboratively work on common projects. To enhance account security and privacy, GitHub allows its users to manage access permissions, review audit logs, and…

Cryptography and Security · Computer Science 2024-09-11 Costanza Alfieri , Juri Di Rocco , Paola Inverardi , Phuong T. Nguyen

GitHub recommends that projects adopt a security file that outlines vulnerability reporting procedures. However, the effectiveness and operational challenges of such files are not yet fully understood. This study aims to clarify the…

Software Engineering · Computer Science 2025-10-17 Rintaro Kanaji , Brittany Reid , Yutaro Kashiwa , Raula Gaikovina Kula , Hajimu Iida

Release notes (RNs) summarize main changes between two consecutive software versions and serve as a central source of information when users upgrade software. While producing high quality RNs can be hard and poses a variety of challenges to…

Software Engineering · Computer Science 2022-03-30 Jianyu Wu , Hao He , Wenxin Xiao , Kai Gao , Minghui Zhou

Born in the late 20s, R is one of the most popular software for statistical computing and graphics. With the development of information technology and the advent of the big data era, great changes have taken place in the R ecosystem. Based…

Other Statistics · Statistics 2026-05-19 Tian-Yuan Huang , Zhilan Lou

The management of third-party package dependencies is crucial to most technology stacks, with package managers acting as brokers to ensure that a verified package is correctly installed, configured, or removed from an application. Diversity…

Software Engineering · Computer Science 2021-08-16 Syful Islam , Raula Gaikovina Kula , Christoph Treude , Bodin Chinthanet , Takashi Ishio , Kenichi Matsumoto

Background: Widespread use of third-party libraries makes ecosystems like Node Package Manager (npm) critical to modern software development. However, this interconnected chain of dependencies also creates challenges: bugs in one library…

Software Engineering · Computer Science 2025-11-10 Mohammadreza Saeidi , Ethan Thoma , Raula Gaikovina Kula , Gema Rodríguez-Pérez

Git is used as the distributed version control system for many open-source software projects. One Git-based service, GitHub, is the most common code hosting and repository service for open-source software projects. For researchers that…

Software Engineering · Computer Science 2021-01-22 Abdulkadir Şeker , Banu Diri , Halil Arslan , Mehmet Fatih Amasyalı

Communication surrounding the development of an open source project largely occurs outside the software repository itself. Historically, large communities often used a collection of mailing lists to discuss the different aspects of their…

Computers and Society · Computer Science 2022-04-04 Melanie Warrick , Samuel F. Rosenblatt , Jean-Gabriel Young , Amanda Casari , Laurent Hébert-Dufresne , James Bagrow

Blockchain is a distributed ledger technique that guarantees the traceability of transactions. Blockchain is adopted in multiple domains like finance (e.g., cryptocurrency), healthcare, security, and supply chain. In the open-source…

Cryptography and Security · Computer Science 2022-05-18 Ajoy Das , Gias Uddin , Guenther Ruhe

Background: Open Source Software (OSS) libraries form the backbone of modern software systems, yet their long-term sustainability often depends on maintainers being reachable for support, coordination, and security reporting. Aims: In this…

Software Engineering · Computer Science 2026-05-04 Alexandros Tsakpinis , Alexander Pretschner

Different communities rely heavily on software, but use quite different software development practices. {\bf Objective}: We wanted to measure the state of the practice in the area of statistical software for psychology to understand how it…

Software Engineering · Computer Science 2018-02-22 Spencer Smith , Yue Sun , Jacques Carette

CONTEXT The R programming language has a huge and active community, especially in the area of statistical computing. Its interpreted nature allows for several interesting constructs, like the manipulation of functions at run-time, that…

Programming Languages · Computer Science 2024-01-30 Florian Sihler , Lukas Pietzschmann , Raphael Straub , Matthias Tichy , Andor Diera , Abdelhalim Dahou

Pre-compiled binary packages provide a convenient way of efficiently distributing software that has been adopted by most Linux package management systems. However, the heterogeneity of the Linux ecosystem, combined with the growing number…

Computation · Statistics 2021-08-10 Iñaki Ucar , Dirk Eddelbuettel
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